{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF05055","protein_label":"UPF0496 protein At3g28290","reviewed":true,"short_name":"DUF677","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf677-pf05055.yaml","source_record_id":"Pfam:PF05055","source_record_label":"Protein of unknown function (DUF677)","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"P0DI78","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF05055","protein_label":"UPF0496 protein At3g28300","reviewed":true,"short_name":"DUF677","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf677-pf05055.yaml","source_record_id":"Pfam:PF05055","source_record_label":"Protein of unknown function (DUF677)","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"P0DI79","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF05055","protein_label":"UPF0496 protein At1g20180","reviewed":true,"short_name":"DUF677","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf677-pf05055.yaml","source_record_id":"Pfam:PF05055","source_record_label":"Protein of unknown function (DUF677)","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"Q6DYE5","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF05055","protein_label":"","reviewed":null,"short_name":"DUF677","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf677-pf05055.yaml","source_record_id":"Pfam:PF05055","source_record_label":"Protein of unknown function (DUF677)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF05055","protein_label":"UPF0496 protein At3g28290","reviewed":true,"short_name":"DUF677","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","source_record_id":"CATH:1.20.1170.10","source_record_label":"CATH homologous superfamily 1.20.1170.10","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"P0DI78","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF05055","protein_label":"UPF0496 protein At3g28300","reviewed":true,"short_name":"DUF677","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","source_record_id":"CATH:1.20.1170.10","source_record_label":"CATH homologous superfamily 1.20.1170.10","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"P0DI79","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF05055","protein_label":"UPF0496 protein At3g28310/At3g28320","reviewed":true,"short_name":"DUF677","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","source_record_id":"CATH:1.20.1170.10","source_record_label":"CATH homologous superfamily 1.20.1170.10","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"Q6E240","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF05055","protein_label":"UPF0496 protein At3g28270","reviewed":true,"short_name":"DUF677","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","source_record_id":"CATH:1.20.1170.10","source_record_label":"CATH homologous superfamily 1.20.1170.10","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"Q9LHD9","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":3001,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":5,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":2},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane [[cite:PUB00010152]].","domain_architectures":66,"interpro_id":"IPR007749","known_evidence_count":null,"matches":3822,"name":"Protein of unknown function (DUF677)","partial_evidence_count":null,"pfam_id":"PF05055","proteins":3710,"proteomes":378,"short_name":"DUF677","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF05055","structures":0,"taxa":1035,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF05055.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":3001,"domain_architectures":66,"matches":3822,"proteins":3710,"proteomes":378,"structures":0,"taxa":1035},"curation_status":"SEEDED","description":"This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane [[cite:PUB00010152]].","id":"Pfam:PF05055","interpro_id":"InterPro:IPR007749","name":"Protein of unknown function (DUF677)","pfam_id":"PF05055","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF677","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF05055"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF05055.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"93eec2cb7f6d490d67111d0c8a3c102bc83a1b4b178aba70dd23a85816279fde"}},"protein_examples":{"candidate_count":5,"discovery_scanned":true,"example_count":5,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf677-pf05055.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF05055","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf677-pf05055.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.20.1170.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P0DI78","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF05055"],"protein_name":"UPF0496 protein At3g28290","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"eb3ff7e1ed18a23455bcbb7120c888dd0d49c333d69b97f9d82822910286f11b","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MVLSKENMLKYSAHLRAYNSACGDHPELKSFDSELQQKTSNLINSFTSDAKTGLVPLPQHAAYKEFTKHLAEVNQQVSDYIIGYGEVVWENSTLRSLVETYFESAKKTLDIAENVTEYVDEAKRGERYIVAAVAQFEKDKENDVGKKTKRYENTLRELKKFEAMGNPFDGDKFTTLFKLMHKEQESLLERVRETKEKLDEELKNIEMEISSRKKWSIISNVLFIGAFVAVAVGSMVLVCTGVGAGVGVAGLLSLPLIAIGWVGVHTILENKIQAREKQEEALKKAHRIANEMDKGMETDKVDMNSISGKVHALKSKITSMLNAVKDATEDGANEVDTKQVMETLTGDVVELTEDIKAVGDDVAKYSKMIEETSYHVLQKITGSGK","sequence_length":385,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"eb3ff7e1ed18a23455bcbb7120c888dd0d49c333d69b97f9d82822910286f11b","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P0DI78.json","taxon_id":"3702","uniprot_accession":"P0DI78","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf677-pf05055.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF05055","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf677-pf05055.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.20.1170.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml"}],"pfam_ids":["PF05055"],"protein_name":"UPF0496 protein At3g28300","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MVLSKENMLKYSAHLRAYNSACGDHPELKSFDSELQQKTSNLINSFTSDAKTGLVPLPQHAAYKEFTKHLAEVNQQVSDYIIGYGEVVWENSTLRSLVETYFESAKKTLDIAENVTEYVDEAKRGERYIVAAVAQFEKDKENDVGKKTKRYENTLRELKKFEAMGNPFDGDKFTTLFKLMHKEQESLLERVRETKEKLDEELKNIEMEISSRKKWSIISNVLFIGAFVAVAVGSMVLVCTGVGAGVGVAGLLSLPLIAIGWVGVHTILENKIQAREKQEEALKKAHRIANEMDKGMETDKVDMNSISGKVHALKSKITSMLNAVKDATEDGANEVDTKQVMETLTGDVVELTEDIKAVGDDVAKYSKMIEETSYHVLQKITGSGK","sequence_length":385,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"eb3ff7e1ed18a23455bcbb7120c888dd0d49c333d69b97f9d82822910286f11b","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P0DI79.json","taxon_id":"3702","uniprot_accession":"P0DI79","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf677-pf05055.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF05055","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf677-pf05055.yaml"}],"pfam_ids":["PF05055"],"protein_name":"UPF0496 protein At1g20180","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MLKVKNFLGSRLKSFPTRKGKSDKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSDLSFHSHFTDYLLDPPQETLDALMQDSSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINHNKIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPALLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCDEIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRLVLAQITGQSS","sequence_length":390,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"bc89c287baa88f62ba73a4caab8ee733caea25189230ca245b15d6438a168d84","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/Q6DYE5.json","taxon_id":"3702","uniprot_accession":"Q6DYE5","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.20.1170.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml"}],"pfam_ids":["PF05055"],"protein_name":"UPF0496 protein At3g28310/At3g28320","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MAFSKDKTSRYSEHVDAYRAACGHHPDLKSFDSKIQQRTSNLIDSLTVEAKTGSVSPHAVHKEVIDIHLVEVSKAVADVITECGEEVWENGTLQSLVKDYFNSTMETLKIFETVTQCVHEAKRGQRYIKAAVAQFKKDSEEKDVGVKKKRYGKTLEELMKFKAMGNPFDDGLLKTQFELMNKQQESLFDRVTETKERIAKEIEEVQKRISNVNTATIVSHVVFGAAAFGYAAGCIALMCTGVGAPLGAGMVTLLPVIVVQWVGVNYVLNNSLEALQKQLKALNKVKPIPERITEGMEADKEGMKSVPEQVDELKDQISSLLQTVDDAIGSEGDEVDVKLDMESLEDDVKTLTTKITEVCETVAKYSKIIKEARLHVLEKITGTG","sequence_length":384,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"318904539d3db387bf1d616258b7a13a441efcaec09c06934d7cf94a32e903c0","sequence_version":3,"source_url":"https://rest.uniprot.org/uniprotkb/Q6E240.json","taxon_id":"3702","uniprot_accession":"Q6E240","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.20.1170.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml"}],"pfam_ids":["PF05055"],"protein_name":"UPF0496 protein At3g28270","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MALSKDLMLKCSEDMMSAYKSACEEHPKLKSFDASLQQRTNKMIDSLTVEDKNGSSSPHDAHMELSKHLVEVTQGVADFITEIEDDVWDNQALKYLVLAYFENTKKTLEIFKTIENCVENAEMGQLLIREALAEFEKESAEKDVGGKKKKYEKTLEDLKSFKEMGDPFDGKVLTTQFERIKKQQESLLEEVSETRKKIQDEISNLEKKTLITNVVFGAAFAIVAVASIALIATGVGAAAGFGALAAPLLAAGWAGVYTTLDKKKDALNKQLEGLKKVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQISKKVEKLTKKITEVGESVEDHSKLIAKARLQVLQKINR","sequence_length":374,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"7651acd89690141abeddd9fc4f38fab0ac04454c367108097b1b1d8e319b90de","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q9LHD9.json","taxon_id":"3702","uniprot_accession":"Q9LHD9","uniprot_release":"2026_03"}],"pfam_id":"PF05055","short_name":"DUF677","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
