{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06572","protein_label":"Uncharacterized protein YfeY","reviewed":true,"short_name":"DUF1131","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/rpoe-regulated-lipoprotein-nf007990.yaml","source_record_id":"NCBIfam:NF007990","source_record_label":"RpoE-regulated lipoprotein","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P76537","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06572","protein_label":"Uncharacterized protein YfeY","reviewed":true,"short_name":"DUF1131","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1131-pf06572.yaml","source_record_id":"Pfam:PF06572","source_record_label":"Protein of unknown function (DUF1131)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P76537","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF06572","protein_label":"","reviewed":null,"short_name":"DUF1131","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1131-pf06572.yaml","source_record_id":"Pfam:PF06572","source_record_label":"Protein of unknown function (DUF1131)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06572","protein_label":"Uncharacterized protein YfeY","reviewed":true,"short_name":"DUF1131","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/yfey-like-superfamily-ipr038714.yaml","source_record_id":"InterPro:IPR038714","source_record_label":"YfeY-like superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P76537","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06572","protein_label":"Uncharacterized protein YfeY","reviewed":true,"short_name":"DUF1131","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/protein-yfey-like-domain-2-60-460-10.yaml","source_record_id":"CATH:2.60.460.10","source_record_label":"protein yfey like domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P76537","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":377,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","description_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":1,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":4},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family consists of several hypothetical bacterial proteins of unknown function.","domain_architectures":3,"interpro_id":"IPR010938","known_evidence_count":null,"matches":614,"name":"Protein of unknown function (DUF1131)","partial_evidence_count":null,"pfam_id":"PF06572","proteins":614,"proteomes":610,"short_name":"DUF1131","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF06572","structures":1,"taxa":919,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF06572.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":377,"domain_architectures":3,"matches":614,"proteins":614,"proteomes":610,"structures":1,"taxa":919},"curation_status":"SEEDED","description":"This family consists of several hypothetical bacterial proteins of unknown function.","id":"Pfam:PF06572","interpro_id":"InterPro:IPR010938","name":"Protein of unknown function (DUF1131)","pfam_id":"PF06572","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF1131","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF06572"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF06572.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"1c3f7cfd4ad266bd484d5ae68f52ef935b13d0d5dc4689e46bfae8ed1373b722"}},"protein_examples":{"candidate_count":1,"discovery_scanned":true,"example_count":1,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/rpoe-regulated-lipoprotein-nf007990.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF007990","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/rpoe-regulated-lipoprotein-nf007990.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1131-pf06572.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF06572","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1131-pf06572.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yfey-like-superfamily-ipr038714.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR038714","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yfey-like-superfamily-ipr038714.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/protein-yfey-like-domain-2-60-460-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:2.60.460.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-yfey-like-domain-2-60-460-10.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P76537","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF06572"],"protein_name":"Uncharacterized protein YfeY","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"fc1e8d64a77f9ad44a9709ed4d029e98bf9f4a5d90a53b26f3cff01ecade6339","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQGVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR","sequence_length":191,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"fc1e8d64a77f9ad44a9709ed4d029e98bf9f4a5d90a53b26f3cff01ecade6339","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P76537.json","taxon_id":"83333","uniprot_accession":"P76537","uniprot_release":"2026_03"}],"pfam_id":"PF06572","short_name":"DUF1131","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
