{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06949","protein_label":"UPF0473 protein YrzB","reviewed":true,"short_name":"DUF1292","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010215.yaml","source_record_id":"NCBIfam:NF010215","source_record_label":"hypothetical protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34828","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06949","protein_label":"UPF0473 protein YrzB","reviewed":true,"short_name":"DUF1292","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010217.yaml","source_record_id":"NCBIfam:NF010217","source_record_label":"hypothetical protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34828","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06949","protein_label":"UPF0473 protein YrzB","reviewed":true,"short_name":"DUF1292","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010219.yaml","source_record_id":"NCBIfam:NF010219","source_record_label":"hypothetical protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34828","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06949","protein_label":"UPF0473 protein YrzB","reviewed":true,"short_name":"DUF1292","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010221.yaml","source_record_id":"NCBIfam:NF010221","source_record_label":"hypothetical protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34828","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06949","protein_label":"UPF0473 protein SSA_2239","reviewed":true,"short_name":"DUF1292","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1292-pf06949.yaml","source_record_id":"Pfam:PF06949","source_record_label":"Protein of unknown function (DUF1292)","source_section":"canonical_examples","taxon_id":"NCBITaxon:388919","taxon_label":"Streptococcus sanguinis (strain SK36)","uniprot_accession":"A3CQZ6","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06949","protein_label":"UPF0473 protein SSU98_0068","reviewed":true,"short_name":"DUF1292","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1292-pf06949.yaml","source_record_id":"Pfam:PF06949","source_record_label":"Protein of unknown function (DUF1292)","source_section":"canonical_examples","taxon_id":"NCBITaxon:391296","taxon_label":"Streptococcus suis (strain 98HAH33)","uniprot_accession":"A4VYN9","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF06949","protein_label":"UPF0473 protein YrzB","reviewed":true,"short_name":"DUF1292","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1292-pf06949.yaml","source_record_id":"Pfam:PF06949","source_record_label":"Protein of unknown function (DUF1292)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34828","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF06949","protein_label":"","reviewed":null,"short_name":"DUF1292","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1292-pf06949.yaml","source_record_id":"Pfam:PF06949","source_record_label":"Protein of unknown function (DUF1292)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":3627,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","description_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":5},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.","domain_architectures":6,"interpro_id":"IPR009711","known_evidence_count":null,"matches":5586,"name":"Protein of unknown function (DUF1292)","partial_evidence_count":null,"pfam_id":"PF06949","proteins":5532,"proteomes":3518,"short_name":"DUF1292","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF06949","structures":0,"taxa":5568,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF06949.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":3627,"domain_architectures":6,"matches":5586,"proteins":5532,"proteomes":3518,"structures":0,"taxa":5568},"curation_status":"SEEDED","description":"This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.","id":"Pfam:PF06949","interpro_id":"InterPro:IPR009711","name":"Protein of unknown function (DUF1292)","pfam_id":"PF06949","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF1292","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF06949"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF06949.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"0b425855ada47af7b7fd94d9170aee1481dc68b1ade8673546563e0f2c917b8b"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Streptococcus sanguinis (strain SK36)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1292-pf06949.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF06949","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1292-pf06949.yaml"}],"pfam_ids":["PF06949"],"protein_name":"UPF0473 protein SSA_2239","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MTHDHNHDHEHEERELITLVDEQGNETLFEILLTIDGKEEFGKNYVLLIPANAEEDENGEVEIQAYSFTENEDGTEGDLQPIPEDSDAEWDMIEEVFNSFMEE","sequence_length":103,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"677bafb86c0a2384dd00c88ad2898ada7ce2711e48eb77e1401f24bca179b46d","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A3CQZ6.json","taxon_id":"388919","uniprot_accession":"A3CQZ6","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Streptococcus suis (strain 98HAH33)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1292-pf06949.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF06949","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1292-pf06949.yaml"}],"pfam_ids":["PF06949"],"protein_name":"UPF0473 protein SSU98_0068","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MAHHHDHEHDHNHDERELITLVDDQGNETLFEILLTIDGQEEFGKNYVLLIPASAEEDENGEVEIQAYSYIENENGTEGDLQPIPEDATAEWDMIEEVFNSFMEEE","sequence_length":106,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"bb36b0ab4c627a8c8cf0ae4bd97672a014ec4745d711d20565c0a42b34f783d3","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A4VYN9.json","taxon_id":"391296","uniprot_accession":"A4VYN9","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010215.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF010215","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010215.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010217.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF010217","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010217.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010219.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF010219","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010219.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010221.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF010221","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010221.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1292-pf06949.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF06949","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1292-pf06949.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:O34828","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF06949"],"protein_name":"UPF0473 protein YrzB","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"849ccf5cbe6bef580fbb2b8a1be59f00b8f89d672aeb9fab9b52acb3ec002342","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MEHGEKNITIVDDQGNEQLCEVLFTFENEEFGKSYVLYYPIESKDDEEVEILASSFTPNEDGENGELFPIETDEEWDMIEETLNTFLADEDEE","sequence_length":93,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"849ccf5cbe6bef580fbb2b8a1be59f00b8f89d672aeb9fab9b52acb3ec002342","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O34828.json","taxon_id":"224308","uniprot_accession":"O34828","uniprot_release":"2026_03"}],"pfam_id":"PF06949","short_name":"DUF1292","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
