{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07044","protein_label":"Uncharacterized protein PA3922","reviewed":true,"short_name":"DUF1329","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf1329-pf07044.yaml","source_record_id":"Pfam:PF07044","source_record_label":"Protein of unknown function (DUF1329)","source_section":"canonical_examples","taxon_id":"NCBITaxon:208964","taxon_label":"Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)","uniprot_accession":"Q9HX91","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF07044","protein_label":"","reviewed":null,"short_name":"DUF1329","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf1329-pf07044.yaml","source_record_id":"Pfam:PF07044","source_record_label":"Protein of unknown function (DUF1329)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":2563,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":1,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":1},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica.","domain_architectures":16,"interpro_id":"IPR010752","known_evidence_count":null,"matches":4143,"name":"Protein of unknown function (DUF1329)","partial_evidence_count":null,"pfam_id":"PF07044","proteins":4141,"proteomes":1465,"short_name":"DUF1329","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF07044","structures":0,"taxa":2071,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF07044.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":2563,"domain_architectures":16,"matches":4143,"proteins":4141,"proteomes":1465,"structures":0,"taxa":2071},"curation_status":"SEEDED","description":"This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica.","id":"Pfam:PF07044","interpro_id":"InterPro:IPR010752","name":"Protein of unknown function (DUF1329)","pfam_id":"PF07044","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF1329","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF07044"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF07044.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"6a90a9cefd565fa3df4a0b548d72159795e7ea4c84c4a528033cca08317297e1"}},"protein_examples":{"candidate_count":1,"discovery_scanned":true,"example_count":1,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf1329-pf07044.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF07044","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1329-pf07044.yaml"}],"pfam_ids":["PF07044"],"protein_name":"Uncharacterized protein PA3922","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKTTKILLHTGVLALSLLATQVMAAVSADEAAKLGTSLTPLGAEKAGNADGSIPAWDGGLATNAGSVDSRGFLANPYASEQPLFTITAQNVDQYKDKLTPGQLAMFKRYPDTYKIPVYKTHRSATVPAAVQEAAKRNATTTKLVEGGNGLENFDTANPFPIPQNGLEVIWNHITRYRGGSVRRLVTQATPQVNGSYQLVYFQDAFTFRTNLKDYNPNKPSNVLFYFKQRVTAPSRLAGNVLLVHETLNQVKEPRLAWLYNAGQRRVRRAPQVSYDGPGTAADGLRTSDNFDMYNGAPDRYDWKLEGKKEIYIPYNSYKLDDPKIKYSEIVKAGHINQDLTRYELHRVWHVVATLKPGERHIYAKRDFYIDEDTWQAAEIDHYDGRGTLWRVAEAHAEQYYDKQVPWYAVETLYDLLSGRYLALGMKNEEKQAYDFNYSASESDYTPAALRQEGVR","sequence_length":455,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"d908bdfb49d3f036ab9452f66f0a1cc93af2bf576fa256b626c3314cc1cb197a","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q9HX91.json","taxon_id":"208964","uniprot_accession":"Q9HX91","uniprot_release":"2026_03"}],"pfam_id":"PF07044","short_name":"DUF1329","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
