{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07226","protein_label":"Inner membrane protein YijD","reviewed":true,"short_name":"DUF1422","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/yijd-family-membrane-protein-nf008278.yaml","source_record_id":"NCBIfam:NF008278","source_record_label":"YijD family membrane protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P0AF40","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07226","protein_label":"Inner membrane protein YijD","reviewed":true,"short_name":"DUF1422","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1422-pf07226.yaml","source_record_id":"Pfam:PF07226","source_record_label":"Protein of unknown function (DUF1422)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P0AF40","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07226","protein_label":"Inner membrane protein YijD","reviewed":true,"short_name":"DUF1422","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1422-pf07226.yaml","source_record_id":"Pfam:PF07226","source_record_label":"Protein of unknown function (DUF1422)","source_section":"canonical_examples","taxon_id":"NCBITaxon:199310","taxon_label":"Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)","uniprot_accession":"P0AF41","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07226","protein_label":"Inner membrane protein YijD","reviewed":true,"short_name":"DUF1422","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1422-pf07226.yaml","source_record_id":"Pfam:PF07226","source_record_label":"Protein of unknown function (DUF1422)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83334","taxon_label":"Escherichia coli O157:H7","uniprot_accession":"P0AF42","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF07226","protein_label":"","reviewed":null,"short_name":"DUF1422","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1422-pf07226.yaml","source_record_id":"Pfam:PF07226","source_record_label":"Protein of unknown function (DUF1422)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":505,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","description_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":2},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.","domain_architectures":1,"interpro_id":"IPR009867","known_evidence_count":null,"matches":762,"name":"Protein of unknown function (DUF1422)","partial_evidence_count":null,"pfam_id":"PF07226","proteins":762,"proteomes":761,"short_name":"DUF1422","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF07226","structures":0,"taxa":1051,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF07226.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":505,"domain_architectures":1,"matches":762,"proteins":762,"proteomes":761,"structures":0,"taxa":1051},"curation_status":"SEEDED","description":"This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.","id":"Pfam:PF07226","interpro_id":"InterPro:IPR009867","name":"Protein of unknown function (DUF1422)","pfam_id":"PF07226","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF1422","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF07226"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF07226.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"59effe5cb45906733772c88dba4ee37a953d36f81be0100103caa36aa1bf5a3c"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/yijd-family-membrane-protein-nf008278.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF008278","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yijd-family-membrane-protein-nf008278.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1422-pf07226.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF07226","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1422-pf07226.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P0AF40","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF07226"],"protein_name":"Inner membrane protein YijD","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"289c874046315cdbb2c74537f88b9e61eb11ff1036aaabb222e08344fc87aefd","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE","sequence_length":119,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"289c874046315cdbb2c74537f88b9e61eb11ff1036aaabb222e08344fc87aefd","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P0AF40.json","taxon_id":"83333","uniprot_accession":"P0AF40","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1422-pf07226.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF07226","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1422-pf07226.yaml"}],"pfam_ids":["PF07226"],"protein_name":"Inner membrane protein YijD","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE","sequence_length":119,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"289c874046315cdbb2c74537f88b9e61eb11ff1036aaabb222e08344fc87aefd","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P0AF41.json","taxon_id":"199310","uniprot_accession":"P0AF41","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli O157:H7","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1422-pf07226.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF07226","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1422-pf07226.yaml"}],"pfam_ids":["PF07226"],"protein_name":"Inner membrane protein YijD","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE","sequence_length":119,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"289c874046315cdbb2c74537f88b9e61eb11ff1036aaabb222e08344fc87aefd","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P0AF42.json","taxon_id":"83334","uniprot_accession":"P0AF42","uniprot_release":"2026_03"}],"pfam_id":"PF07226","short_name":"DUF1422","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
