{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07285","protein_label":"UPF0354 protein YtpQ","reviewed":true,"short_name":"DUF1444","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010189.yaml","source_record_id":"NCBIfam:NF010189","source_record_label":"hypothetical protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34496","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07285","protein_label":"UPF0354 protein SaurJH9_1798","reviewed":true,"short_name":"DUF1444","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1444-pf07285.yaml","source_record_id":"Pfam:PF07285","source_record_label":"Protein of unknown function (DUF1444)","source_section":"canonical_examples","taxon_id":"NCBITaxon:359786","taxon_label":"Staphylococcus aureus (strain JH9)","uniprot_accession":"A5ITR5","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07285","protein_label":"UPF0354 protein NWMN_1636","reviewed":true,"short_name":"DUF1444","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1444-pf07285.yaml","source_record_id":"Pfam:PF07285","source_record_label":"Protein of unknown function (DUF1444)","source_section":"canonical_examples","taxon_id":"NCBITaxon:426430","taxon_label":"Staphylococcus aureus (strain Newman)","uniprot_accession":"A6QHS6","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF07285","protein_label":"UPF0354 protein YtpQ","reviewed":true,"short_name":"DUF1444","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1444-pf07285.yaml","source_record_id":"Pfam:PF07285","source_record_label":"Protein of unknown function (DUF1444)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34496","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF07285","protein_label":"","reviewed":null,"short_name":"DUF1444","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf1444-pf07285.yaml","source_record_id":"Pfam:PF07285","source_record_label":"Protein of unknown function (DUF1444)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":809,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","description_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":2},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family contains several hypothetical bacterial proteins of unknown function that are approximately 250 residues long.","domain_architectures":3,"interpro_id":"IPR010838","known_evidence_count":null,"matches":1278,"name":"Protein of unknown function (DUF1444)","partial_evidence_count":null,"pfam_id":"PF07285","proteins":1277,"proteomes":1224,"short_name":"DUF1444","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF07285","structures":0,"taxa":1856,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF07285.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":809,"domain_architectures":3,"matches":1278,"proteins":1277,"proteomes":1224,"structures":0,"taxa":1856},"curation_status":"SEEDED","description":"This family contains several hypothetical bacterial proteins of unknown function that are approximately 250 residues long.","id":"Pfam:PF07285","interpro_id":"InterPro:IPR010838","name":"Protein of unknown function (DUF1444)","pfam_id":"PF07285","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF1444","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF07285"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF07285.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"f78f26fe6128fb849642c35a8a31520f42032aa8053537ccfcd1f3f9f1d71166"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Staphylococcus aureus (strain JH9)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1444-pf07285.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF07285","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1444-pf07285.yaml"}],"pfam_ids":["PF07285"],"protein_name":"UPF0354 protein SaurJH9_1798","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK","sequence_length":285,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"ebac22995ffac9d8c893b6e73640b2dbc73aa69eb15555cfa8254334272f36cb","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A5ITR5.json","taxon_id":"359786","uniprot_accession":"A5ITR5","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Staphylococcus aureus (strain Newman)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1444-pf07285.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF07285","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1444-pf07285.yaml"}],"pfam_ids":["PF07285"],"protein_name":"UPF0354 protein NWMN_1636","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK","sequence_length":285,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"ebac22995ffac9d8c893b6e73640b2dbc73aa69eb15555cfa8254334272f36cb","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A6QHS6.json","taxon_id":"426430","uniprot_accession":"A6QHS6","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010189.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF010189","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010189.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf1444-pf07285.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF07285","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1444-pf07285.yaml"}],"pfam_ids":["PF07285"],"protein_name":"UPF0354 protein YtpQ","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKMTSRKLSDILKQRLQHENRSFLFDREKDTLRVEDQTTKKGITLDLPPIIAKWELKKDEAIDEIVYYVSEAMTAMEGKAQEMTGKETRIYPVIRSTSFPDKSSEDIPLIYDDHTAETRIYYALDLGKTYRLIDQRMLEKENWTKERIRETAAFNLRSLPTVVKEDTVAGNYFYFFRANDGYDASRILNEAILNEYKQHAEGELAISVPHQDVLILADIRNESGYDILGQMSMSFFAGGTVPITALSFLYNEGKLEPVFILAKSRPKKD","sequence_length":269,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"14b4570dfac9e9085257d2d5f1faaf4aa52458850cd953bd8fb539dc59b19841","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O34496.json","taxon_id":"224308","uniprot_accession":"O34496","uniprot_release":"2026_03"}],"pfam_id":"PF07285","short_name":"DUF1444","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
