{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF08956","protein_label":"Protein YoaG","reviewed":true,"short_name":"DUF1869","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf1869-pf08956.yaml","source_record_id":"Pfam:PF08956","source_record_label":"Domain of unknown function (DUF1869)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P64496","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF08956","protein_label":"Protein YoaG","reviewed":true,"short_name":"DUF1869","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf1869-pf08956.yaml","source_record_id":"Pfam:PF08956","source_record_label":"Domain of unknown function (DUF1869)","source_section":"canonical_examples","taxon_id":"NCBITaxon:199310","taxon_label":"Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)","uniprot_accession":"P64497","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF08956","protein_label":"Protein YoaG","reviewed":true,"short_name":"DUF1869","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf1869-pf08956.yaml","source_record_id":"Pfam:PF08956","source_record_label":"Domain of unknown function (DUF1869)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83334","taxon_label":"Escherichia coli O157:H7","uniprot_accession":"P64498","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF08956","protein_label":"","reviewed":null,"short_name":"DUF1869","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf1869-pf08956.yaml","source_record_id":"Pfam:PF08956","source_record_label":"Domain of unknown function (DUF1869)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF08956","protein_label":"Protein YoaG","reviewed":true,"short_name":"DUF1869","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/yoag-superfamily-ipr036489.yaml","source_record_id":"InterPro:IPR036489","source_record_label":"YoaG superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P64496","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF08956","protein_label":"Protein YoaG","reviewed":true,"short_name":"DUF1869","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/yoag-3-30-160-220.yaml","source_record_id":"CATH:3.30.160.220","source_record_label":"YoaG","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P64496","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":140,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","domain_of_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":3},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This domain is found in a set of hypothetical bacterial proteins.","domain_architectures":2,"interpro_id":"IPR015051","known_evidence_count":null,"matches":206,"name":"Domain of unknown function (DUF1869)","partial_evidence_count":null,"pfam_id":"PF08956","proteins":205,"proteomes":196,"short_name":"DUF1869","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF08956","structures":1,"taxa":297,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF08956.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":140,"domain_architectures":2,"matches":206,"proteins":205,"proteomes":196,"structures":1,"taxa":297},"curation_status":"SEEDED","description":"This domain is found in a set of hypothetical bacterial proteins.","id":"Pfam:PF08956","interpro_id":"InterPro:IPR015051","name":"Domain of unknown function (DUF1869)","pfam_id":"PF08956","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF1869","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF08956"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF08956.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"9c31f28525fa0b38e654ccf7570e41176abaf0301d11f7977e83d83f5d6d0524"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf1869-pf08956.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF08956","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1869-pf08956.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yoag-superfamily-ipr036489.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR036489","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yoag-superfamily-ipr036489.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yoag-3-30-160-220.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.160.220","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yoag-3-30-160-220.yaml"}],"pfam_ids":["PF08956"],"protein_name":"Protein YoaG","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW","sequence_length":60,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"000c09c3f8fbeecbe349c8f69d8edfc691608699a8996c70ae2c2f8fb18996ee","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P64496.json","taxon_id":"83333","uniprot_accession":"P64496","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf1869-pf08956.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF08956","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1869-pf08956.yaml"}],"pfam_ids":["PF08956"],"protein_name":"Protein YoaG","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW","sequence_length":60,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"000c09c3f8fbeecbe349c8f69d8edfc691608699a8996c70ae2c2f8fb18996ee","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P64497.json","taxon_id":"199310","uniprot_accession":"P64497","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli O157:H7","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf1869-pf08956.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF08956","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1869-pf08956.yaml"}],"pfam_ids":["PF08956"],"protein_name":"Protein YoaG","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW","sequence_length":60,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"000c09c3f8fbeecbe349c8f69d8edfc691608699a8996c70ae2c2f8fb18996ee","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P64498.json","taxon_id":"83334","uniprot_accession":"P64498","uniprot_release":"2026_03"}],"pfam_id":"PF08956","short_name":"DUF1869","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
