{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YkzL","reviewed":true,"short_name":"DUF3199","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/protein-yqbg-nf050002.yaml","source_record_id":"NCBIfam:NF050002","source_record_label":"protein YqbG","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"C0H3Z6","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YqbG","reviewed":true,"short_name":"DUF3199","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/protein-yqbg-nf050002.yaml","source_record_id":"NCBIfam:NF050002","source_record_label":"protein YqbG","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P45923","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YkzL","reviewed":true,"short_name":"DUF3199","source_category":"sequence/domain/cdd","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/cdd/putative-head-tail-connector-protein-yqbg-from-bacillus-subtilis-and-s-cd08053.yaml","source_record_id":"CDD:cd08053","source_record_label":"Yqbg","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"C0H3Z6","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YqbG","reviewed":true,"short_name":"DUF3199","source_category":"sequence/domain/cdd","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/cdd/putative-head-tail-connector-protein-yqbg-from-bacillus-subtilis-and-s-cd08053.yaml","source_record_id":"CDD:cd08053","source_record_label":"Yqbg","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P45923","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YkzL","reviewed":true,"short_name":"DUF3199","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf3199-pf11436.yaml","source_record_id":"Pfam:PF11436","source_record_label":"Protein of unknown function (DUF3199)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"C0H3Z6","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YqbG","reviewed":true,"short_name":"DUF3199","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf3199-pf11436.yaml","source_record_id":"Pfam:PF11436","source_record_label":"Protein of unknown function (DUF3199)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P45923","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF11436","protein_label":"","reviewed":null,"short_name":"DUF3199","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf3199-pf11436.yaml","source_record_id":"Pfam:PF11436","source_record_label":"Protein of unknown function (DUF3199)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YkzL","reviewed":true,"short_name":"DUF3199","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml","source_record_id":"InterPro:IPR036558","source_record_label":"YqbG-like superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"C0H3Z6","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YqbG","reviewed":true,"short_name":"DUF3199","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml","source_record_id":"InterPro:IPR036558","source_record_label":"YqbG-like superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P45923","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YkzL","reviewed":true,"short_name":"DUF3199","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml","source_record_id":"CATH:1.10.3230.10","source_record_label":"YqbG-like","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"C0H3Z6","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11436","protein_label":"Uncharacterized protein YqbG","reviewed":true,"short_name":"DUF3199","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml","source_record_id":"CATH:1.10.3230.10","source_record_label":"YqbG-like","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P45923","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":34,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":2,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":5},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"Some members in this family of proteins with unknown function are annotated as YqbG however this cannot be confirmed. Currently the proteins has no known function.","domain_architectures":1,"interpro_id":"IPR013514","known_evidence_count":null,"matches":57,"name":"Protein of unknown function (DUF3199)","partial_evidence_count":null,"pfam_id":"PF11436","proteins":57,"proteomes":51,"short_name":"DUF3199","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF11436","structures":2,"taxa":116,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF11436.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":34,"domain_architectures":1,"matches":57,"proteins":57,"proteomes":51,"structures":2,"taxa":116},"curation_status":"SEEDED","description":"Some members in this family of proteins with unknown function are annotated as YqbG however this cannot be confirmed. Currently the proteins has no known function.","id":"Pfam:PF11436","interpro_id":"InterPro:IPR013514","name":"Protein of unknown function (DUF3199)","pfam_id":"PF11436","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF3199","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF11436"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF11436.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"f9dfb9b865d5dc6151ab892913543b2c144dec21e596276b656d160bbfb261a9"}},"protein_examples":{"candidate_count":2,"discovery_scanned":true,"example_count":2,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/protein-yqbg-nf050002.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF050002","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/protein-yqbg-nf050002.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/putative-head-tail-connector-protein-yqbg-from-bacillus-subtilis-and-s-cd08053.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd08053","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/putative-head-tail-connector-protein-yqbg-from-bacillus-subtilis-and-s-cd08053.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf3199-pf11436.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11436","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3199-pf11436.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR036558","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.10.3230.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml"}],"pfam_ids":["PF11436"],"protein_name":"Uncharacterized protein YkzL","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MLIEPTDVASYSVYDRVKNRPEELLAQDIIEAEAEAALITGHRFEDSLYDPLPGKVKLALVKLAQYFALVNSDESASSSYQYEKMGDYSYTVSGEGRIQRPEVYHLLEEFIKPGYVPESSRLKVRSL","sequence_length":127,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"17f6a4be8f5c2322a022f5ada38c078a7893eaa70c11271ac30af6a069414925","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/C0H3Z6.json","taxon_id":"224308","uniprot_accession":"C0H3Z6","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/protein-yqbg-nf050002.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF050002","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/protein-yqbg-nf050002.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/putative-head-tail-connector-protein-yqbg-from-bacillus-subtilis-and-s-cd08053.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd08053","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/putative-head-tail-connector-protein-yqbg-from-bacillus-subtilis-and-s-cd08053.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf3199-pf11436.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11436","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3199-pf11436.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR036558","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.10.3230.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml"}],"pfam_ids":["PF11436"],"protein_name":"Uncharacterized protein YqbG","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MLLITPDELKSYSVFESVKTRPDELLKQDILEATADIILKVGHDFSDAEYIPLPETVRLALLKLSQFYALINGDESIIKGYTTEKIGDYSYTLGDGSSLQKPDVYALIKDYVKPADPDLEGIEAKVRMRSI","sequence_length":131,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"ed9e2696ec76f80fafa6033af5fdb3533c32027b57e6058a16736e7f0020866f","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/P45923.json","taxon_id":"224308","uniprot_accession":"P45923","uniprot_release":"2026_03"}],"pfam_id":"PF11436","short_name":"DUF3199","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
