{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized protein YdhF","reviewed":true,"short_name":"DUF4352","source_category":"sequence/conservation/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/conservation/interpro/membrane-lipoprotein-lipid-attachment-site-ipr012640.yaml","source_record_id":"InterPro:IPR012640","source_record_label":"Membrane lipoprotein, lipid attachment site","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05497","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized protein YdhF","reviewed":true,"short_name":"DUF4352","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","source_record_id":"InterPro:IPR029051","source_record_label":"Domain of unknown function DUF4352","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05497","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YcdA","reviewed":true,"short_name":"DUF4352","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","source_record_id":"InterPro:IPR029051","source_record_label":"Domain of unknown function DUF4352","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34538","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YjhA","reviewed":true,"short_name":"DUF4352","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","source_record_id":"InterPro:IPR029051","source_record_label":"Domain of unknown function DUF4352","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34725","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized protein YxkC","reviewed":true,"short_name":"DUF4352","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","source_record_id":"InterPro:IPR029051","source_record_label":"Domain of unknown function DUF4352","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P94356","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF11611","protein_label":"","reviewed":null,"short_name":"DUF4352","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","source_record_id":"InterPro:IPR029051","source_record_label":"Domain of unknown function DUF4352","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YcdA","reviewed":true,"short_name":"DUF4352","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5105-ipr031343.yaml","source_record_id":"InterPro:IPR031343","source_record_label":"Domain of unknown function DUF5105","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34538","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized protein YdhF","reviewed":true,"short_name":"DUF4352","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4352-pf11611.yaml","source_record_id":"Pfam:PF11611","source_record_label":"Domain of unknown function (DUF4352)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05497","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YjhA","reviewed":true,"short_name":"DUF4352","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4352-pf11611.yaml","source_record_id":"Pfam:PF11611","source_record_label":"Domain of unknown function (DUF4352)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34725","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized protein YxkC","reviewed":true,"short_name":"DUF4352","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4352-pf11611.yaml","source_record_id":"Pfam:PF11611","source_record_label":"Domain of unknown function (DUF4352)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P94356","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF11611","protein_label":"","reviewed":null,"short_name":"DUF4352","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4352-pf11611.yaml","source_record_id":"Pfam:PF11611","source_record_label":"Domain of unknown function (DUF4352)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YcdA","reviewed":true,"short_name":"DUF4352","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf5105-pf17118.yaml","source_record_id":"Pfam:PF17118","source_record_label":"Domain of unknown function (DUF5105)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34538","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YcdA","reviewed":true,"short_name":"DUF4352","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml","source_record_id":"InterPro:IPR029050","source_record_label":"Immunoprotective extracellular, immunoglobulin-like domain superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34538","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YjhA","reviewed":true,"short_name":"DUF4352","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml","source_record_id":"InterPro:IPR029050","source_record_label":"Immunoprotective extracellular, immunoglobulin-like domain superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34725","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized protein YxkC","reviewed":true,"short_name":"DUF4352","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml","source_record_id":"InterPro:IPR029050","source_record_label":"Immunoprotective extracellular, immunoglobulin-like domain superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P94356","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YcdA","reviewed":true,"short_name":"DUF4352","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml","source_record_id":"CATH:2.60.40.1240","source_record_label":"CATH homologous superfamily 2.60.40.1240","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34538","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized lipoprotein YjhA","reviewed":true,"short_name":"DUF4352","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml","source_record_id":"CATH:2.60.40.1240","source_record_label":"CATH homologous superfamily 2.60.40.1240","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34725","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11611","protein_label":"Uncharacterized protein YxkC","reviewed":true,"short_name":"DUF4352","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml","source_record_id":"CATH:2.60.40.1240","source_record_label":"CATH homologous superfamily 2.60.40.1240","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P94356","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":2485,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","domain_of_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":4,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":7},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"Members of these family are putative lipoproteins that fall into the Antigen MPT63/MPB63 (immunoprotective extracellular protein) superfamily.","domain_architectures":41,"interpro_id":"IPR029051","known_evidence_count":null,"matches":4227,"name":"Domain of unknown function (DUF4352)","partial_evidence_count":null,"pfam_id":"PF11611","proteins":4179,"proteomes":2845,"short_name":"DUF4352","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF11611","structures":2,"taxa":4337,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF11611.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":2485,"domain_architectures":41,"matches":4227,"proteins":4179,"proteomes":2845,"structures":2,"taxa":4337},"curation_status":"SEEDED","description":"Members of these family are putative lipoproteins that fall into the Antigen MPT63/MPB63 (immunoprotective extracellular protein) superfamily.","id":"Pfam:PF11611","interpro_id":"InterPro:IPR029051","name":"Domain of unknown function (DUF4352)","pfam_id":"PF11611","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF4352","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF11611"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF11611.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"63901558a55eeba2c3e52591d3b872295e41892c42d513d3ac0c37d4ab107158"}},"protein_examples":{"candidate_count":4,"discovery_scanned":true,"example_count":4,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/conservation/interpro/membrane-lipoprotein-lipid-attachment-site-ipr012640.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR012640","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/membrane-lipoprotein-lipid-attachment-site-ipr012640.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR029051","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf4352-pf11611.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11611","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4352-pf11611.yaml"}],"pfam_ids":["PF08139","PF11611"],"protein_name":"Uncharacterized protein YdhF","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLKDIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDWNKDIYLEELNGELEGGAEKSGNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF","sequence_length":236,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"d6869d0da78d7ef2107ed620671353e15111693cbddd7707a18785435b0181c0","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/O05497.json","taxon_id":"224308","uniprot_accession":"O05497","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR029051","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5105-ipr031343.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR031343","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5105-ipr031343.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf5105-pf17118.yaml","qualification_status":"NOT_ASSESSED","record_id":"Pfam:PF17118","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5105-pf17118.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR029050","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:2.60.40.1240","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml"}],"pfam_ids":["PF11611","PF17118"],"protein_name":"Uncharacterized lipoprotein YcdA","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGKDKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE","sequence_length":354,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"61229bd5efecd27dc40eebb7f6f2f44af4cb3156f001bfca95971b307dc5bd6a","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O34538.json","taxon_id":"224308","uniprot_accession":"O34538","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR029051","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf4352-pf11611.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11611","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4352-pf11611.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR029050","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:2.60.40.1240","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml"}],"pfam_ids":["PF11611"],"protein_name":"Uncharacterized lipoprotein YjhA","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKELDKELKKGGEPKTKKDDQIHKIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYVIPKGEQKHYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD","sequence_length":213,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"fa156c1bcdde0dc59501b55e422538c2d1b9692f26301880c5d575edcc3b3395","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O34725.json","taxon_id":"224308","uniprot_accession":"O34725","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR029051","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf4352-pf11611.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11611","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4352-pf11611.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR029050","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:2.60.40.1240","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml"}],"pfam_ids":["PF11611"],"protein_name":"Uncharacterized protein YxkC","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MRHKIITFILAVVVIIIIGNMIGGGGGSEATSKTSSSSKAETEKTYNIGDTVKTEKTEVTVTKVEDRDTVGTQYVEKKASEGGTIVAVQYTIKNVSKKPISSFSIPTVKLVDADGTSYDSDIDASVNYATETKVDNSKILSDLNPNIKVTGVKAFEVDKEAYAKGTWKLKFSNDVIVKIK","sequence_length":180,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"3ea702753d11ed831671cde2469af19f4473fb87305b5090ca223579771c0387","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/P94356.json","taxon_id":"224308","uniprot_accession":"P94356","uniprot_release":"2026_03"}],"pfam_id":"PF11611","short_name":"DUF4352","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
