{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/cdd","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/cdd/catalytic-nodb-homology-domain-of-streptococcus-pneumoniae-peptidoglyc-cd10947.yaml","source_record_id":"CDD:cd10947","source_record_label":"CE4_SpPgdA_BsYjeA_like","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Anti-sigma-V factor RsiV","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml","source_record_id":"InterPro:IPR025303","source_record_label":"Deacetylase PdaC","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05403","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml","source_record_id":"InterPro:IPR025303","source_record_label":"Deacetylase PdaC","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Anti-sigma-V factor RsiV","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml","source_record_id":"InterPro:IPR021729","source_record_label":"Domain of unknown function DUF3298","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05403","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml","source_record_id":"InterPro:IPR021729","source_record_label":"Domain of unknown function DUF3298","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF11738","protein_label":"","reviewed":null,"short_name":"DUF3298","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml","source_record_id":"InterPro:IPR021729","source_record_label":"Domain of unknown function DUF3298","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Esterase Rv3036c","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf3298-pf11738.yaml","source_record_id":"Pfam:PF11738","source_record_label":"Protein of unknown function (DUF3298)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83332","taxon_label":"Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)","uniprot_accession":"I6YF08","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Anti-sigma-V factor RsiV","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf3298-pf11738.yaml","source_record_id":"Pfam:PF11738","source_record_label":"Protein of unknown function (DUF3298)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05403","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf3298-pf11738.yaml","source_record_id":"Pfam:PF11738","source_record_label":"Protein of unknown function (DUF3298)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF11738","protein_label":"","reviewed":null,"short_name":"DUF3298","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf3298-pf11738.yaml","source_record_id":"Pfam:PF11738","source_record_label":"Protein of unknown function (DUF3298)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Anti-sigma-V factor RsiV","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/pdac-pf13739.yaml","source_record_id":"Pfam:PF13739","source_record_label":"Deacetylase PdaC","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05403","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/pdac-pf13739.yaml","source_record_id":"Pfam:PF13739","source_record_label":"Deacetylase PdaC","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Anti-sigma-V factor RsiV","reviewed":true,"short_name":"DUF3298","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml","source_record_id":"InterPro:IPR037126","source_record_label":"PdaC/RsiV-like superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05403","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml","source_record_id":"InterPro:IPR037126","source_record_label":"PdaC/RsiV-like superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Anti-sigma-V factor RsiV","reviewed":true,"short_name":"DUF3298","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml","source_record_id":"CATH:3.30.565.40","source_record_label":"Fervidobacterium nodosum Rt17-B1 like","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05403","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml","source_record_id":"CATH:3.30.565.40","source_record_label":"Fervidobacterium nodosum Rt17-B1 like","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Anti-sigma-V factor RsiV","reviewed":true,"short_name":"DUF3298","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml","source_record_id":"CATH:3.90.640.20","source_record_label":"Heat-shock cognate protein, ATPase","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O05403","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF11738","protein_label":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","reviewed":true,"short_name":"DUF3298","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml","source_record_id":"CATH:3.90.640.20","source_record_label":"Heat-shock cognate protein, ATPase","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34798","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":4154,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":8},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.","domain_architectures":60,"interpro_id":"IPR021729","known_evidence_count":null,"matches":6649,"name":"Protein of unknown function (DUF3298)","partial_evidence_count":null,"pfam_id":"PF11738","proteins":6617,"proteomes":4704,"short_name":"DUF3298","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF11738","structures":5,"taxa":6583,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF11738.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":4154,"domain_architectures":60,"matches":6649,"proteins":6617,"proteomes":4704,"structures":5,"taxa":6583},"curation_status":"SEEDED","description":"This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.","id":"Pfam:PF11738","interpro_id":"InterPro:IPR021729","name":"Protein of unknown function (DUF3298)","pfam_id":"PF11738","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF3298","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF11738"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF11738.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"440d7857e4a45b2f968baf1f2c891b876bafd0bdb17401208e861b1be6d5cc97"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf3298-pf11738.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11738","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3298-pf11738.yaml"}],"pfam_ids":["PF11738"],"protein_name":"Esterase Rv3036c","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MRYLIATAVLVAVVLVGWPAAGAPPSCAGLGGTVQAGQICHVHASGPKYMLDMTFPVDYPDQQALTDYITQNRDGFVNVAQGSPLRDQPYQMDATSEQHSSGQPPQATRSVVLKFFQDLGGAHPSTWYKAFNYNLATSQPITFDTLFVPGTTPLDSIYPIVQRELARQTGFGAAILPSTGLDPAHYQNFAITDDSLIFYFAQGELLPSFVGACQAQVPRSAIPPLAI","sequence_length":227,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"2212220e7e3068d8fba26810e77a4697ac2fab56118d860864b6c2753208fbed","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/I6YF08.json","taxon_id":"83332","uniprot_accession":"I6YF08","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR025303","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR021729","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf3298-pf11738.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11738","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3298-pf11738.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/pdac-pf13739.yaml","qualification_status":"NOT_ASSESSED","record_id":"Pfam:PF13739","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pdac-pf13739.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR037126","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.565.40","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.90.640.20","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:O05403","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF11738","PF13739"],"protein_name":"Anti-sigma-V factor RsiV","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"2c787b61d116a4ecd8ec7c06facafff1637c6dedccfed48b70312c69b04b645d","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_02","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MDKRLQQLREEYKNVQIPKELDIIVEKALQQEPKKKRIVMWPTSAAIAAAILFTALVNINPDAAQAMSKIPVIGKIVKAITFIEIKEEKDQSSIDVKTPALSGLSNKELENSINEKYLKESQQLYKEFIQSTSKNKKGHLSIYSDYETVTDTPDLLSIRRNIETTQASSYTQSRYITIDKKNDILLTLKSLFKDERYIKVISQNIKEQMKQQMKEDPNKIYWLTDEDAEPFKTILPDQTFYITEDHKLVISFDEYEVAPGYMGVTEFTIPTGVISNLLVGERYIR","sequence_length":285,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"2c787b61d116a4ecd8ec7c06facafff1637c6dedccfed48b70312c69b04b645d","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O05403.json","taxon_id":"224308","uniprot_accession":"O05403","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/catalytic-nodb-homology-domain-of-streptococcus-pneumoniae-peptidoglyc-cd10947.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd10947","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/catalytic-nodb-homology-domain-of-streptococcus-pneumoniae-peptidoglyc-cd10947.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR025303","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR021729","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf3298-pf11738.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF11738","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3298-pf11738.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/pdac-pf13739.yaml","qualification_status":"NOT_ASSESSED","record_id":"Pfam:PF13739","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pdac-pf13739.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR037126","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.565.40","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.90.640.20","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml"}],"pfam_ids":["PF01522","PF11738","PF13739"],"protein_name":"Peptidoglycan-N-acetylmuramic acid deacetylase PdaC","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MLAKRIKWFHVLIAVVCVVGLIGFFHNHSLKKETVMNKVRTDSQYGNVEIATLVNDGKTFNYAVNYPVFKNEKMDSALKRFAEKEVRQFQKETKDVDQEHTTKRNELNVDYKIVHYAKQTVAIVFNEYKYIGGAHGQTVKKTFNYDFSKQAFLSIDDIFKEDADYLHKLSLIAYHELKKNKDIAADDALLKEGTAPKKENFSRFAIKEDYIELYFDTYQVAAGYLGEQSIAIKKSLLKDILKEQYIDKAKNKNKIKEQKPKHEVISLPKEETVDPNQKVIALTFDDGPNPATTNQILDSLKKYKGHATFFVLGSRVQYYPETLIRMLKEGNEVGNHSWSHPLLTRLSVKEALKQINDTQDIIEKISGYRPTLVRPPYGGINDELRSQMKMDVALWDVDPEDWKDRNKKTIVDRVMNQAGDGRTILIHDIYRTSADAADEIIKKLTDQGYQLVTVSQLEEVKKQREAK","sequence_length":467,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"bd5e5b0f4b44f5703de864936e8c860e4722ff7d35eb2566abf3a0d5ca9b4084","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O34798.json","taxon_id":"224308","uniprot_accession":"O34798","uniprot_release":"2026_03"}],"pfam_id":"PF11738","short_name":"DUF3298","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}