{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF12452","protein_label":"","reviewed":null,"short_name":"DUF3685","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/uncharacterised-protein-family-ycf55-ipr022552.yaml","source_record_id":"InterPro:IPR022552","source_record_label":"Uncharacterised protein family Ycf55","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF12452","protein_label":"Uncharacterized protein ycf55","reviewed":true,"short_name":"DUF3685","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf3685-pf12452.yaml","source_record_id":"Pfam:PF12452","source_record_label":"Protein of unknown function (DUF3685)","source_section":"canonical_examples","taxon_id":"NCBITaxon:2787","taxon_label":"Porphyra purpurea","uniprot_accession":"P51203","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF12452","protein_label":"Ycf55-like protein","reviewed":true,"short_name":"DUF3685","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf3685-pf12452.yaml","source_record_id":"Pfam:PF12452","source_record_label":"Protein of unknown function (DUF3685)","source_section":"canonical_examples","taxon_id":"NCBITaxon:1111708","taxon_label":"Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)","uniprot_accession":"P74126","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF12452","protein_label":"Uncharacterized protein ycf55","reviewed":true,"short_name":"DUF3685","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf3685-pf12452.yaml","source_record_id":"Pfam:PF12452","source_record_label":"Protein of unknown function (DUF3685)","source_section":"canonical_examples","taxon_id":"NCBITaxon:2788","taxon_label":"Pyropia yezoensis","uniprot_accession":"Q1XDT4","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF12452","protein_label":"","reviewed":null,"short_name":"DUF3685","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf3685-pf12452.yaml","source_record_id":"Pfam:PF12452","source_record_label":"Protein of unknown function (DUF3685)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":671,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":1},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. There are two completely conserved residues (L and D) that may be functionally important.","domain_architectures":17,"interpro_id":"IPR022552","known_evidence_count":null,"matches":1357,"name":"Protein of unknown function (DUF3685)","partial_evidence_count":null,"pfam_id":"PF12452","proteins":911,"proteomes":603,"short_name":"DUF3685","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF12452","structures":0,"taxa":1687,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF12452.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":671,"domain_architectures":17,"matches":1357,"proteins":911,"proteomes":603,"structures":0,"taxa":1687},"curation_status":"SEEDED","description":"This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. There are two completely conserved residues (L and D) that may be functionally important.","id":"Pfam:PF12452","interpro_id":"InterPro:IPR022552","name":"Protein of unknown function (DUF3685)","pfam_id":"PF12452","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF3685","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF12452"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF12452.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"0241a04d2294212281914b315bea56532f4847791062f6f3af040d55269a9273"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Porphyra purpurea","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf3685-pf12452.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF12452","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3685-pf12452.yaml"}],"pfam_ids":["PF12452"],"protein_name":"Uncharacterized protein ycf55","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MNNYWPNSQGPILNKEVAELLVRTSVKINKKLTNCSNEVLILDVFRTEVKRNLLKIILAELEKILLEIYTSNLDLSDVTNLTESILIDLFHRSIKRFCRLYELDYNSICQNVHDINYLMYDYKMLLQILIIQLIFGSSSKVKKTFNLFAENIPIKQVEIFLENYLIQLSNIIAHILIQNFETVQETNASYLCNVKFLSDRKLEKLKNNLVWNTLIQNYIERPRAIYESRYKVWVFYQDGLNCQYVYACRSTELYTLSSAQVLVTFLLEIQDFFIPKIKSTVFLIGQFIIYIGQNIFNQIMRTFLEIIRRSSNFKKQSSSL","sequence_length":320,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"5ac51db36925a6f9b20cb310efd680a177c0329d2b302cb1bf0d13fe01c89452","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P51203.json","taxon_id":"2787","uniprot_accession":"P51203","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf3685-pf12452.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF12452","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3685-pf12452.yaml"}],"pfam_ids":["PF00072","PF12452","PF30550"],"protein_name":"Ycf55-like protein","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MSESPLTIVIVDEDPVFRLGLITVLGRETGVQVLGEGETLDDLRQQLETLAPSILLIDPQFPRRSQSAWPLLRQLSSAYPQVKICLLTASLEYDQLLAAKTQGIAAYFPKGTAIADLVTGLKQVHFGQTCWPSLQTVNAPPLSLWEKLIWPLFRDGLGQIEQSLQQVQKSLQVPSLSDFDRLFWRGRERELKFAQWLVRNLLPQRLKTWHKATNILTATTTVLPPSPPSPRRSGVRTITLRPPSNLTALGQILQQMPLQVENLTAIPLELDILQPLKRQELLSLGQQQLETTINELKALRITPAQLPENCLSIVAEMWRSLSLTFFGKYCQPKSEFSLEQIQSLLEVYQPIICREKLVKIPFVVPLFHHLLFGEPLVVNQKAYPLGSTEAQQYSDLYAQNLVIQLANSTMVFILNYFADHEAIKLALYEYSMLSSRQVARFRNDLAWYYQFSRYWLNPKQIFESQHTLLYLTPAGIVTTQVYAPRQQELTQLRAVPWFVTIVLECRDALSPRVRSVIEFVGNGLVFLLTQVVGRAIGLVGKGIIQGIGNTWQESRSQQKRSN","sequence_length":562,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"1d22dce2ef147ed33b628bfdd0ed8d965de468610e75421a7c50c830a2271087","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P74126.json","taxon_id":"1111708","uniprot_accession":"P74126","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Pyropia yezoensis","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf3685-pf12452.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF12452","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3685-pf12452.yaml"}],"pfam_ids":["PF12452"],"protein_name":"Uncharacterized protein ycf55","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MNNYWPSSQGPTLNQEVAELLVRTSIKINKRLTNCSQEVLILDVFRTEVKRNLLKIILAELEKILLEIYNSNLDVNDITNLTENILIDLFHRCIKRFCKLYELDCIDIYQDIHDLNYLLNDYKMLLQILIIQLLFGSSQTVNKTFNLFTYNMPVKQVEIFLENYLIQLSNIIAHMLVQNFNTVNETNASYLCNVKFLSDRKLEKLKNNLIWNTIIKNYLERPRAIYESRYKVWGFYQEGLNCQYIYACRSNELQMLSPMQIIITFLLEVQDFFVPKIKSTIFLIGQIIIYAGQNLLNQIMRTSLEILRRSSNFKKQSNSL","sequence_length":320,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"ab03f2f88ad01d15907d96fdc223b265ce262f417474cfebe1b76d183316d802","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q1XDT4.json","taxon_id":"2788","uniprot_accession":"Q1XDT4","uniprot_release":"2026_03"}],"pfam_id":"PF12452","short_name":"DUF3685","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
