{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF13197","protein_label":"Uncharacterized protein MJ0233","reviewed":true,"short_name":"DUF4013","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4013-pf13197.yaml","source_record_id":"Pfam:PF13197","source_record_label":"Protein of unknown function (DUF4013)","source_section":"canonical_examples","taxon_id":"NCBITaxon:243232","taxon_label":"Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)","uniprot_accession":"Q57685","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF13197","protein_label":"Uncharacterized protein MJ1189","reviewed":true,"short_name":"DUF4013","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4013-pf13197.yaml","source_record_id":"Pfam:PF13197","source_record_label":"Protein of unknown function (DUF4013)","source_section":"canonical_examples","taxon_id":"NCBITaxon:243232","taxon_label":"Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)","uniprot_accession":"Q58589","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF13197","protein_label":"","reviewed":null,"short_name":"DUF4013","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4013-pf13197.yaml","source_record_id":"Pfam:PF13197","source_record_label":"Protein of unknown function (DUF4013)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":1050,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":2,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":1},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This is a family of uncharacterised proteins that is found in archaea and bacteria.","domain_architectures":9,"interpro_id":"IPR025098","known_evidence_count":null,"matches":1209,"name":"Protein of unknown function (DUF4013)","partial_evidence_count":null,"pfam_id":"PF13197","proteins":1204,"proteomes":584,"short_name":"DUF4013","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF13197","structures":0,"taxa":1089,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF13197.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":1050,"domain_architectures":9,"matches":1209,"proteins":1204,"proteomes":584,"structures":0,"taxa":1089},"curation_status":"SEEDED","description":"This is a family of uncharacterised proteins that is found in archaea and bacteria.","id":"Pfam:PF13197","interpro_id":"InterPro:IPR025098","name":"Protein of unknown function (DUF4013)","pfam_id":"PF13197","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF4013","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF13197"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF13197.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"9ce17e910dbc1cfb81099082f085baec2f4a93fc04093b77a2c0fcc2afe60b1e"}},"protein_examples":{"candidate_count":2,"discovery_scanned":true,"example_count":2,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf4013-pf13197.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF13197","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4013-pf13197.yaml"}],"pfam_ids":["PF13197"],"protein_name":"Uncharacterized protein MJ0233","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MGTIESYLTNSYNYIIFNFKKLCIGGLMSAIVGAMSGVTTAFIDLFMERANYDIMHIIMSFLIYFGIIFIIGLIVSAIIGGYNVRIMKTTVEGLNVAPDWNNITDLLYRGILYIVGLVLLNIIFYFIPAILFVFGIFSLYISKIIGAFLIIISILIFIISVISLWLYSKLAEVNYSVKGFYGFFEFKEIFKMIGIRYIILVIIIAIINFIISLIVVLPLNIIDIFISYSALANSILTIIYISIKGISYALSTFVDFYLGVFSIRAVALYYKDRKGIT","sequence_length":277,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"a1357f39bd65e32b113a2f04cdc3ac699b07dcf73415dc8e428ee56fba99cd65","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q57685.json","taxon_id":"243232","uniprot_accession":"Q57685","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf4013-pf13197.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF13197","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4013-pf13197.yaml"}],"pfam_ids":["PF13197"],"protein_name":"Uncharacterized protein MJ1189","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKKLEYYLKDAFYYVLSDVKKGIVGGLLSSTSGAIGAIFGIILSILLIHNINPNDVVGLDNNILLTSLIVASFGFLIALIIGFILDGYYVRVMKTTVENYDVLPDWDDIAELLKRGFLYWIGNIILSIIFMIVPILFIIFGVFLIFLPLVGIVFIGIGFLLLFVSTIALLIYEGLAEVNYSVKGFSGFFEFKEIFRMINLNYIILLIIVGVIVIVINFVVQLPFILLKIFAISPARYSTFSSSETIVDVISAVISAFVGFYTAVFAKRAIALYYKDRVEELKK","sequence_length":283,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"68d60514017fd4f368b079083971ccc11928d4ed49c43e1dbce27c22bb86e9b1","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q58589.json","taxon_id":"243232","uniprot_accession":"Q58589","uniprot_release":"2026_03"}],"pfam_id":"PF13197","short_name":"DUF4013","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
