{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14172","protein_label":"Uncharacterized protein YjgB","reviewed":true,"short_name":"DUF4309","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4309-pf14172.yaml","source_record_id":"Pfam:PF14172","source_record_label":"Domain of unknown function (DUF4309)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34960","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF14172","protein_label":"","reviewed":null,"short_name":"DUF4309","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4309-pf14172.yaml","source_record_id":"Pfam:PF14172","source_record_label":"Domain of unknown function (DUF4309)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":458,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","domain_of_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":1,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":1},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family includes the B. subtilis YjgB protein [swissprot:O34960], which is functionally uncharacterised. This is not a homologue of E. coli YjgB, Swiss: P27250. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B [[cite:PUB00057342]]. This family is found in bacteria, and is approximately 140 amino acids in length.","domain_architectures":21,"interpro_id":"IPR025453","known_evidence_count":null,"matches":787,"name":"Domain of unknown function (DUF4309)","partial_evidence_count":null,"pfam_id":"PF14172","proteins":755,"proteomes":578,"short_name":"DUF4309","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF14172","structures":1,"taxa":787,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF14172.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":458,"domain_architectures":21,"matches":787,"proteins":755,"proteomes":578,"structures":1,"taxa":787},"curation_status":"SEEDED","description":"This family includes the B. subtilis YjgB protein [swissprot:O34960], which is functionally uncharacterised. This is not a homologue of E. coli YjgB, Swiss: P27250. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B [[cite:PUB00057342]]. This family is found in bacteria, and is approximately 140 amino acids in length.","id":"Pfam:PF14172","interpro_id":"InterPro:IPR025453","name":"Domain of unknown function (DUF4309)","pfam_id":"PF14172","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF4309","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF14172"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF14172.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"3bd73e8810d039c77c7a16f2fe77e91d0e22dc24e9dc6ef8aa3d61bde6c597cc"}},"protein_examples":{"candidate_count":1,"discovery_scanned":true,"example_count":1,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf4309-pf14172.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF14172","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4309-pf14172.yaml"}],"pfam_ids":["PF14172"],"protein_name":"Uncharacterized protein YjgB","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTNQSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGDNRFDLYHWNMGQPGYGFSYHKDMTISEIRYFGTGVERQLNLGGVTPEVLQKQLGPVNRVLTVPFTDEIDYVYDTGRYELHFVIGTDQTADHVNLKAK","sequence_length":191,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"2f7136f51b4e45322717265acef9d2a6a7fb6eb047a3a26a983bc30c35e9ed8f","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O34960.json","taxon_id":"224308","uniprot_accession":"O34960","uniprot_release":"2026_03"}],"pfam_id":"PF14172","short_name":"DUF4309","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
