{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14794","protein_label":"Putative tRNA-binding protein YtpR","reviewed":true,"short_name":"DUF4479","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/ytpr-family-trna-binding-protein-nf045760.yaml","source_record_id":"NCBIfam:NF045760","source_record_label":"YtpR family tRNA-binding protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34943","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14794","protein_label":"Putative tRNA-binding protein YtpR","reviewed":true,"short_name":"DUF4479","source_category":"sequence/domain/cdd","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/cdd/trna-binding-domain-containing-prokaryotic-phenylalanly-trna-synthetas-cd02796.yaml","source_record_id":"CDD:cd02796","source_record_label":"tRNA_bind_bactPheRS","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34943","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14794","protein_label":"Putative tRNA-binding protein YtpR","reviewed":true,"short_name":"DUF4479","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4479-ipr027855.yaml","source_record_id":"InterPro:IPR027855","source_record_label":"Domain of unknown function DUF4479","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34943","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF14794","protein_label":"","reviewed":null,"short_name":"DUF4479","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4479-ipr027855.yaml","source_record_id":"InterPro:IPR027855","source_record_label":"Domain of unknown function DUF4479","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14794","protein_label":"Putative tRNA-binding protein YtpR","reviewed":true,"short_name":"DUF4479","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/phenylalanly-trna-synthetase-trna-binding-domain-ipr033714.yaml","source_record_id":"InterPro:IPR033714","source_record_label":"Phenylalanly tRNA synthetase, tRNA-binding-domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34943","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14794","protein_label":"Putative tRNA-binding protein YtpR","reviewed":true,"short_name":"DUF4479","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4479-pf14794.yaml","source_record_id":"Pfam:PF14794","source_record_label":"Domain of unknown function (DUF4479)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34943","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF14794","protein_label":"","reviewed":null,"short_name":"DUF4479","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf4479-pf14794.yaml","source_record_id":"Pfam:PF14794","source_record_label":"Domain of unknown function (DUF4479)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14794","protein_label":"Putative tRNA-binding protein YtpR","reviewed":true,"short_name":"DUF4479","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/ytpr-like-superfamily-ipr037154.yaml","source_record_id":"InterPro:IPR037154","source_record_label":"YtpR-like superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34943","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF14794","protein_label":"Putative tRNA-binding protein YtpR","reviewed":true,"short_name":"DUF4479","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/ytpr-like-3-30-1940-10.yaml","source_record_id":"CATH:3.30.1940.10","source_record_label":"YtpR-like","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"O34943","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":902,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","domain_of_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":1,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":7},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with [pfam:PF01588].","domain_architectures":2,"interpro_id":"IPR027855","known_evidence_count":null,"matches":1413,"name":"Domain of unknown function (DUF4479)","partial_evidence_count":null,"pfam_id":"PF14794","proteins":1413,"proteomes":1411,"short_name":"DUF4479","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF14794","structures":1,"taxa":1948,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF14794.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":902,"domain_architectures":2,"matches":1413,"proteins":1413,"proteomes":1411,"structures":1,"taxa":1948},"curation_status":"SEEDED","description":"This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with [pfam:PF01588].","id":"Pfam:PF14794","interpro_id":"InterPro:IPR027855","name":"Domain of unknown function (DUF4479)","pfam_id":"PF14794","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF4479","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF14794"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF14794.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"1fa17bda45e9b3fb6c041754ea28e05fe1548877e62ece0084c08f646f95a902"}},"protein_examples":{"candidate_count":1,"discovery_scanned":true,"example_count":1,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/ytpr-family-trna-binding-protein-nf045760.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF045760","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ytpr-family-trna-binding-protein-nf045760.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/trna-binding-domain-containing-prokaryotic-phenylalanly-trna-synthetas-cd02796.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd02796","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/trna-binding-domain-containing-prokaryotic-phenylalanly-trna-synthetas-cd02796.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4479-ipr027855.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR027855","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4479-ipr027855.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/phenylalanly-trna-synthetase-trna-binding-domain-ipr033714.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR033714","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/phenylalanly-trna-synthetase-trna-binding-domain-ipr033714.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf4479-pf14794.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF14794","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4479-pf14794.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/ytpr-like-superfamily-ipr037154.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR037154","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ytpr-like-superfamily-ipr037154.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/ytpr-like-3-30-1940-10.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.1940.10","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ytpr-like-3-30-1940-10.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:O34943","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01588","PF14794"],"protein_name":"Putative tRNA-binding protein YtpR","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"9e0f7b72dda50b1463852aa9b5c3a5214aa12d9e28095eae6c2b1f6f1dd45a68","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MNAFYNKEGVGDTLLISLQDVTREQLGYEKHGDVVKIFNNETKETTGFNIFNASSYLTIDENGPVALSETFVQDVNEILNRNGVEETLVVDLSPKFVVGYVESKEKHPNADKLSVCKVNVGEETLQIVCGAPNVDQGQKVVVAKVGAVMPSGLVIKDAELRGVPSSGMICSAKELDLPDAPAEKGILVLEGDYEAGDAFQF","sequence_length":201,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"9e0f7b72dda50b1463852aa9b5c3a5214aa12d9e28095eae6c2b1f6f1dd45a68","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O34943.json","taxon_id":"224308","uniprot_accession":"O34943","uniprot_release":"2026_03"}],"pfam_id":"PF14794","short_name":"DUF4479","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
