{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF17401","protein_label":"Uncharacterized protein CT_666","reviewed":true,"short_name":"DUF5407","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf5407-pf17401.yaml","source_record_id":"Pfam:PF17401","source_record_label":"Family of unknown function (DUF5407)","source_section":"canonical_examples","taxon_id":"NCBITaxon:272561","taxon_label":"Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)","uniprot_accession":"O84673","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF17401","protein_label":"Uncharacterized protein CPn_0710/CP_0036/CPj0710/CpB0737","reviewed":true,"short_name":"DUF5407","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf5407-pf17401.yaml","source_record_id":"Pfam:PF17401","source_record_label":"Family of unknown function (DUF5407)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83558","taxon_label":"Chlamydia pneumoniae","uniprot_accession":"Q9Z7J5","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF17401","protein_label":"","reviewed":null,"short_name":"DUF5407","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf5407-pf17401.yaml","source_record_id":"Pfam:PF17401","source_record_label":"Family of unknown function (DUF5407)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":21,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","description_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":2,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":1},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This is a family of unknown function found in Chlamydiales.","domain_architectures":2,"interpro_id":"IPR035365","known_evidence_count":null,"matches":31,"name":"Family of unknown function (DUF5407)","partial_evidence_count":null,"pfam_id":"PF17401","proteins":30,"proteomes":26,"short_name":"DUF5407","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF17401","structures":0,"taxa":66,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF17401.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":21,"domain_architectures":2,"matches":31,"proteins":30,"proteomes":26,"structures":0,"taxa":66},"curation_status":"SEEDED","description":"This is a family of unknown function found in Chlamydiales.","id":"Pfam:PF17401","interpro_id":"InterPro:IPR035365","name":"Family of unknown function (DUF5407)","pfam_id":"PF17401","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF5407","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF17401"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF17401.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"f711399c88d5ed1d310e2aec46033f73925ff9761dd155b4397a4e1d65bdfde2"}},"protein_examples":{"candidate_count":2,"discovery_scanned":true,"example_count":2,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf5407-pf17401.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF17401","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5407-pf17401.yaml"}],"pfam_ids":["PF17401"],"protein_name":"Uncharacterized protein CT_666","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MASGSCSAFNFNQMLDGVCKYVQGVQQYLTELETSTQGTVDLGTMFNLQFRMQILSQYMESVSNILTAVNTEMITMARAVKGS","sequence_length":83,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"9630553c25701b4e77cdf57e6f2b03f8164acd2affa57a525d5b753a84739604","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O84673.json","taxon_id":"272561","uniprot_accession":"O84673","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Chlamydia pneumoniae","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf5407-pf17401.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF17401","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5407-pf17401.yaml"}],"pfam_ids":["PF17401"],"protein_name":"Uncharacterized protein CPn_0710/CP_0036/CPj0710/CpB0737","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MATNKSCTAFDFNKMLDGVCTYVKGVQQYLTELETSTQGTVDLGTMFNLQFRMQILSQYMESVSNILTAVNTEMITMARAVKGS","sequence_length":84,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"1c6aa504598b73dcbf412f91eaa43460394351c7e597916189dc88e280509f71","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q9Z7J5.json","taxon_id":"83558","uniprot_accession":"Q9Z7J5","uniprot_release":"2026_03"}],"pfam_id":"PF17401","short_name":"DUF5407","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}