{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF17402","protein_label":"Uncharacterized protein HP_0085","reviewed":true,"short_name":"DUF5408","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf5408-pf17402.yaml","source_record_id":"Pfam:PF17402","source_record_label":"Family of unknown function (DUF5408)","source_section":"canonical_examples","taxon_id":"NCBITaxon:85962","taxon_label":"Helicobacter pylori (strain ATCC 700392 / 26695)","uniprot_accession":"P64651","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF17402","protein_label":"Uncharacterized protein jhp_0078","reviewed":true,"short_name":"DUF5408","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf5408-pf17402.yaml","source_record_id":"Pfam:PF17402","source_record_label":"Family of unknown function (DUF5408)","source_section":"canonical_examples","taxon_id":"NCBITaxon:85963","taxon_label":"Helicobacter pylori (strain J99 / ATCC 700824)","uniprot_accession":"P64652","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF17402","protein_label":"","reviewed":null,"short_name":"DUF5408","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf5408-pf17402.yaml","source_record_id":"Pfam:PF17402","source_record_label":"Family of unknown function (DUF5408)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":25,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","description_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":2,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":1},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This is a family of unknown function found in Helicobacteraceae. Family members are predicted to contain one trans-membrane region.","domain_architectures":1,"interpro_id":"IPR035366","known_evidence_count":null,"matches":32,"name":"Family of unknown function (DUF5408)","partial_evidence_count":null,"pfam_id":"PF17402","proteins":32,"proteomes":31,"short_name":"DUF5408","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF17402","structures":0,"taxa":53,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF17402.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":25,"domain_architectures":1,"matches":32,"proteins":32,"proteomes":31,"structures":0,"taxa":53},"curation_status":"SEEDED","description":"This is a family of unknown function found in Helicobacteraceae. Family members are predicted to contain one trans-membrane region.","id":"Pfam:PF17402","interpro_id":"InterPro:IPR035366","name":"Family of unknown function (DUF5408)","pfam_id":"PF17402","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF5408","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF17402"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF17402.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"977b1c674039c3493e09740d57974799ebb5f2e4d54e9a4d95c62ece053894ff"}},"protein_examples":{"candidate_count":2,"discovery_scanned":true,"example_count":2,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Helicobacter pylori (strain ATCC 700392 / 26695)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf5408-pf17402.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF17402","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5408-pf17402.yaml"}],"pfam_ids":["PF17402"],"protein_name":"Uncharacterized protein HP_0085","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQEQK","sequence_length":62,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"36111a81aa04723eb027b345ef4bfcc07947afd1515c3a91899c5c0daf4d3131","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P64651.json","taxon_id":"85962","uniprot_accession":"P64651","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Helicobacter pylori (strain J99 / ATCC 700824)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf5408-pf17402.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF17402","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5408-pf17402.yaml"}],"pfam_ids":["PF17402"],"protein_name":"Uncharacterized protein jhp_0078","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQEQK","sequence_length":62,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"36111a81aa04723eb027b345ef4bfcc07947afd1515c3a91899c5c0daf4d3131","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P64652.json","taxon_id":"85963","uniprot_accession":"P64652","uniprot_release":"2026_03"}],"pfam_id":"PF17402","short_name":"DUF5408","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
