{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF25638","protein_label":"Protein YeeW","reviewed":true,"short_name":"DUF5983_N","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/yeew-like-domain-ipr057653.yaml","source_record_id":"InterPro:IPR057653","source_record_label":"YeeW-like domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P64526","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF25638","protein_label":"","reviewed":null,"short_name":"DUF5983_N","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/yeew-like-domain-ipr057653.yaml","source_record_id":"InterPro:IPR057653","source_record_label":"YeeW-like domain","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF25638","protein_label":"Protein YeeW","reviewed":true,"short_name":"DUF5983_N","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf5983-n-pf25638.yaml","source_record_id":"Pfam:PF25638","source_record_label":"Family of unknown function (DUF5983) N-terminal domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P64526","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF25638","protein_label":"Uncharacterized protein YeeW","reviewed":true,"short_name":"DUF5983_N","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf5983-n-pf25638.yaml","source_record_id":"Pfam:PF25638","source_record_label":"Family of unknown function (DUF5983) N-terminal domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:83334","taxon_label":"Escherichia coli O157:H7","uniprot_accession":"P64527","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF25638","protein_label":"","reviewed":null,"short_name":"DUF5983_N","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/duf5983-n-pf25638.yaml","source_record_id":"Pfam:PF25638","source_record_label":"Family of unknown function (DUF5983) N-terminal domain","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":63,"candidate_reasons":["name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":2,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":2},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family of proteins are likely to be phage derived. This domain likely forms a homodimeric structure composed of three beta strands provided by each monomer, with one strand swapped with the other monomer.","domain_architectures":2,"interpro_id":"IPR057653","known_evidence_count":null,"matches":90,"name":"Family of unknown function (DUF5983) N-terminal domain","partial_evidence_count":null,"pfam_id":"PF25638","proteins":90,"proteomes":53,"short_name":"DUF5983_N","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF25638","structures":0,"taxa":104,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF25638.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":63,"domain_architectures":2,"matches":90,"proteins":90,"proteomes":53,"structures":0,"taxa":104},"curation_status":"SEEDED","description":"This family of proteins are likely to be phage derived. This domain likely forms a homodimeric structure composed of three beta strands provided by each monomer, with one strand swapped with the other monomer.","id":"Pfam:PF25638","interpro_id":"InterPro:IPR057653","name":"Family of unknown function (DUF5983) N-terminal domain","pfam_id":"PF25638","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF5983_N","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF25638"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF25638.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"6228948e61657b52bdc8f1e0e8580b4a4175f42f6950114025037d4eb8cf3115"}},"protein_examples":{"candidate_count":2,"discovery_scanned":true,"example_count":2,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/yeew-like-domain-ipr057653.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR057653","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/yeew-like-domain-ipr057653.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf5983-n-pf25638.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF25638","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5983-n-pf25638.yaml"}],"pfam_ids":["PF25638"],"protein_name":"Protein YeeW","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASPHQLL","sequence_length":64,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"aef6a694854dad3b0b3cd5c38ddc4caccb6de1a5754a1dd91de0a15c465a5e67","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P64526.json","taxon_id":"83333","uniprot_accession":"P64526","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli O157:H7","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/duf5983-n-pf25638.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF25638","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5983-n-pf25638.yaml"}],"pfam_ids":["PF25638"],"protein_name":"Uncharacterized protein YeeW","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASPHQLL","sequence_length":64,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"aef6a694854dad3b0b3cd5c38ddc4caccb6de1a5754a1dd91de0a15c465a5e67","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P64527.json","taxon_id":"83334","uniprot_accession":"P64527","uniprot_release":"2026_03"}],"pfam_id":"PF25638","short_name":"DUF5983_N","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
