id: Pfam:PF13898
pfam_id: PF13898
name: Deubiquitinating enzyme MINDY-3/4, conserved domain
short_name: MINDY-3_4_CD
seed_status: EX_DUF
characterization_status: UNSCORED
curation_status: SEEDED
source_url: https://www.ebi.ac.uk/interpro/api/entry/pfam/PF13898
counters:
  proteins: 4929
  matches: 5272
  proteomes: 1768
  taxa: 5489
  structures: 0
  alphafold_models: 4295
  domain_architectures: 66
provenance:
  snapshot_id: interpro-pfam-duf-2026-10-10
  path: data/worklists/interpro-pfam-duf-2026-10-10.json
  sha256: 17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383
  generated_at: '2026-10-10T07:44:21.614711Z'
  source_url: https://www.ebi.ac.uk/interpro/api/entry/pfam/
interpro_id: InterPro:IPR025257
description: Deubiquitinating enzymes (DUBs) remove ubiquitin (Ub) from Ub-conjugated substrates to regulate
  the functional outcome of ubiquitination. This entry includes MINDY-3/4. They belong to the MINDY (motif
  interacting with Ub-containing novel DUB) family (peptidase family C121), whose members are deubiquitinating
  enzymes releasing Lys48-linked ubiquitin [[cite:PUB00081935]]. This is a conserved domain found in deubiquitinating
  enzymes, MINDY-3 and MINDY-4.