Ontology mapping
- Primary identifier
-
CHEBI:30915 - Ontology label
- 2-oxoglutaric acid
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (7)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| 2-Ketoglutaric acid | EXACT_SYNONYM | kg_microbe | |
| 2-oxoglutaric acid | EXACT_SYNONYM | kg_microbe | |
| 2-oxopentanedioic acid | EXACT_SYNONYM | kg_microbe | |
| Oxoglutaric acid | EXACT_SYNONYM | kg_microbe | |
| a-Ketoglutaric acid | EXACT_SYNONYM | unmapped_duplicate_review_2026_05_11 | |
| alpha-ketoglutamate | RAW_TEXT | merge_from_UNMAPPED_0323 | |
| alpha-ketoglutaric acid (100 mM). | RAW_TEXT | culturemech:output/ingredient_occurrences.tsv |
Chemical properties
- Cas rn
- 328-50-7
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:51:03.383729+00:00
- Molecular formula
- C5H6O5
- Inchi
- InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)
- Smiles
- O=C(O)CCC(=O)C(=O)O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 7
- Distinct media
- 7
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:03.383757+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:328-50-7 from PubChem API via name lookup (alpha-ketoglutaric acid) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 4 synonyms from kg-microbe P4.4 enrichment: 2-Ketoglutaric acid, 2-oxoglutaric acid, 2-oxopentanedioic acid, Oxoglutaric acid |
| 2026-05-01T07:35:32.142183+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:27.967740+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C5H6O5; inchi=InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,; smiles=O=C(O)CCC(=O)C(=O)O | |
| 2026-05-02T03:12:12.423555+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-11T04:08:29Z | mediaingredientmech-agentic-curation LLM | MERGED_FROM_UNMAPPED_DUPLICATE | MAPPED | Absorbed duplicate unmapped record A-Ketoglutaric_Acid.yaml (UNMAPPED_0266); local mapped CHEBI:30915 record represents alpha-ketoglutaric acid and the unmapped surface form is the alpha/a notation variant used in CultureBotHT. |
| 2026-06-16T00:00:00+00:00 | merge_duplicate_unmapped LLM | MERGED_FROM_UNMAPPED_DUPLICATE | MAPPED | Absorbed duplicate UNMAPPED_0323 "alpha-ketoglutamate". Edison deep research (9 citations) resolved it as a misspelling of alpha-ketoglutarate = 2-oxoglutarate — the SAME compound as this CHEBI:30915 record, not a distinct ingredient. Promotion was refused by promote_resolved_unmapped.py (PK collision on CHEBI:30915), so merged the surface form here as a synonym instead. |
| 2026-06-03T03:22:14.581179+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.80) | |
| 2026-06-04T05:38:59.200426+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-06-09T05:23:46.722952+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'alpha-ketoglutaric acid' -> '2-oxoglutaric acid': synced to canonical CHEBI label (preferred_term 'alpha-ketoglutaric acid' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-27T03:16:39.518339+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 4/4 -> 7/7 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-08-30T04:48:06.233536+00:00 | claude_culturemech_alias_backfill | ADDED_SYNONYMS | Added 1 CultureMech recipe surface form(s) that folded onto this record's published label but were absent from MIM's label index, so CultureMech could not resolve them: 'alpha-ketoglutaric acid (100 mM).' (x1 CultureMech mentions). Source: culturemech:output/ingredient_occurrences.tsv. |