Ontology mapping
- Primary identifier
-
CHEBI:22599 - Ontology label
- arabinose
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Carbon Source
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (3)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Carbon source; Properties: Organic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| arabino-pentose | EXACT_SYNONYM | kg_microbe | |
| Role: Carbon source; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech |
Chemical properties
- Cas rn
- 147-81-9
- Data source
- CHEBI dbxref on CHEBI:22599 (corrected from an EC number, #114)
- Retrieval date
- 2026-04-05T19:51:08.136664+00:00
- Molecular formula
- C5H10O5
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 5
- Distinct media
- 5
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:08.136714+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:226-214-6 from PubChem API via name lookup (Arabinose) |
| 2026-04-05T23:43:16.904589+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:226-214-6 from PubChem API (ontology label) via name preprocessing (arabinose) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 1 synonyms from kg-microbe P4.4 enrichment: arabino-pentose |
| 2026-04-19T07:39:23.955331+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 1 duplicate MIM record(s) into this one: Arabinose_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:32.232614+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:28.053765+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C5H10O5 | |
| 2026-05-02T03:12:12.547907+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.110168+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 1.00) | |
| 2026-06-04T05:38:59.200442+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-06-09T05:23:46.725498+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Arabinose' -> 'arabinose': synced to canonical CHEBI label (preferred_term 'Arabinose' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-06T00:00:00+00:00 | issue_114_cas_audit LLM | CORRECTED | cas_rn 226-214-6 -> 147-81-9. 226-214-6 is an EC/EINECS registry number (format NNN-NNN-N), not a CAS-RN — the same class of fetch_cas_rn_from_pubchem mis-assignment as Beef extract's 103-47-9 (=CHES) in #114. The replacement is this record's own CHEBI term CHEBI:22599's CAS dbxref, and that term's label matches the substance, so it is evidence rather than inference. The EC number is recorded here rather than discarded: it was correct information in the wrong field. | |
| 2026-08-27T03:16:39.518359+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 3/3 -> 5/5 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |