Ontology mapping
- Primary identifier
-
CHEBI:29125 - Ontology label
- arsenate(3-)
Synonyms (7)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| (after autoclaving) | RAW_TEXT | CultureMech | |
| Arsenate ion | EXACT_SYNONYM | kg_microbe | |
| arsorate | EXACT_SYNONYM | kg_microbe | |
| tetraoxoarsenate(V) | EXACT_SYNONYM | kg_microbe | |
| Arsenate | EXACT_SYNONYM | chebi_synonym_review | |
| tetraoxidoarsenate(3-) | EXACT_SYNONYM | chebi_synonym_review | |
| tetraoxoarsenate(3-) | EXACT_SYNONYM | chebi_synonym_review |
Rejected enrichment labels (7)
Provenance-only candidates: these are not synonyms and do not resolve to this record.
| Rejected label | Disposition | Source | Occurrences |
|---|---|---|---|
| dihydrogen arsenite | REJECTED_LABEL | kg_microbe | |
| reduction: arsenate detoxification | REJECTED_LABEL | kg_microbe | |
| H2AsO3(-) | REJECTED_LABEL | sssom_other_backfill | |
| [AsO(OH)2](-) | REJECTED_LABEL | sssom_other_backfill | |
| arsenite | REJECTED_LABEL | sssom_other_backfill | |
| arsenite(1-) | REJECTED_LABEL | sssom_other_backfill | |
| dihydroxidooxidoarsenate(1-) | REJECTED_LABEL | sssom_other_backfill |
Chemical properties
- Cas rn
- 15584-04-0
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:51:08.943261+00:00
- Molecular formula
- AsO4
- Inchi
- InChI=1S/AsH3O4/c2-1(3,4)5/h(H3,2,3,4,5)/p-3
- Smiles
- O=[As]([O-])([O-])[O-]
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 2
- Distinct media
- 2
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:08.943303+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:15584-04-0 from PubChem API via name lookup (Arsenate) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 5 synonyms from kg-microbe P4.4 enrichment: Arsenate ion, arsorate, dihydrogen arsenite, reduction: arsenate detoxification, tetraoxoarsenate(V) |
| 2026-05-01T07:35:32.263152+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:28.083140+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=AsO4; inchi=InChI=1S/AsH3O4/c2-1(3,4)5/h(H3,2,3,4,5)/p-3; smiles=O=[As]([O-])([O-])[O-] | |
| 2026-05-02T03:12:12.588237+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-06-09T05:23:46.726440+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Arsenate' -> 'arsenate(3-)': synced to canonical CHEBI label (preferred_term 'Arsenate' unchanged). | |
| 2026-08-10T00:00:00+00:00 | regrade_synonym_matches | REGRADED_EXACT_TO_SYNONYM | mapping_quality EXACT_MATCH -> SYNONYM_MATCH (#317). The record's label does not equal the term's primary label 'arsenate(3-)'; it matches the ChEBI synonym 'Arsenate ion' on CHEBI:29125. The schema defines EXACT_MATCH as a direct match to the term and SYNONYM_MATCH as a match to a known synonym, so the recorded grade overstated. ontology_id is unchanged — the term is correct. The SSSOM predicate is unaffected (both grades emit skos:exactMatch). | |
| 2026-08-27T03:16:39.518364+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 1/1 -> 2/2 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-02T17:40:44.716277+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 1 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: 'H2AsO3(-)'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). | |
| 2026-09-02T22:41:49.137449+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 4 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: '[AsO(OH)2](-)'; 'arsenite'; 'arsenite(1-)'; 'dihydroxidooxidoarsenate(1-)'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). | |
| 2026-09-20T00:00:00Z | retire_wrong_compound_synonyms LLM | CORRECTED | Marked 6 synonym(s) non-resolving: ['dihydrogen arsenite', 'H2AsO3(-)', '[AsO(OH)2](-)', 'arsenite', 'arsenite(1-)', 'dihydroxidooxidoarsenate(1-)']. ChEBI gives these names to CHEBI:29242, not to this record's CHEBI:29125 -- arsenate is not arsenite: a different oxidation state. Kept as REJECTED_LABEL so a rebuild cannot restore them from kg-microbe's synonym list (#669). | |
| 2026-09-22T06:14:49.563933+00:00 | claude LLM | REJECTED_TRAIT_SYNONYMS | Retyped activity/assay phrases as provenance-only REJECTED_LABEL because they describe a process or organism trait, not an ingredient name (#703): 'reduction: arsenate detoxification'. Preserved original text and source metadata. No identity, mapping, role, or remaining-synonym claim was adjudicated. |