Ontology mapping
- Primary identifier
-
kgmicrobe.ingredient:bhi - Notes
- BHI is a source label for Hespellia porcina in MicrobeDecoder. Its CultureMech link is an unverified candidate pending original recipe comparison; no exact formulation equivalence is asserted.
Related CultureMech recipe
- Medium id
- CultureMech:015492
- Medium name
- BHI
- Relationship
- CANDIDATE_UNVERIFIED
- Source path
- data/normalized_yaml/specialized/bhi.yaml
- Evidence
- MicrobeDecoder source BHI is recorded for Hespellia porcina (database.csv row 8022; Bergey doi:10.1002/9781118960608.gbm00644). CultureMech:015492 is a CultureBotHT/FEBA brain-heart-infusion salt broth without supplements. The original MicrobeDecoder formulation and quantities are unavailable in that row. Common constituent names and abbreviation agreement do not establish either exact formulation or a verified source-specific composition comparison; retain only an unverified candidate.
Synonyms (1)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| BHI | RAW_TEXT | microbedecoder |
Evidence (1)
MANUAL_CURATION
via MIM curation (#369)
Registry identity retained while the whole-record grounding is reviewed separately. Corrected prior active evidence: BHI to MICRO:0000193 brain heart infusion is a whole-medium identity/alias claim, not a has-part edge. The component was removed; identity cleanup must be handled separately.
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
- Source occurrences
- Source
- microbedecoder
- Count
- 2
- Source columns
- bergey:substrates
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-08-04T02:54:09.684805+00:00 | audit_import_ingredients[microbedecoder] | CREATED_AS_UNMAPPED | UNMAPPED | Imported from microbedecoder (source_id=kgmicrobe.compound:bhi); no CAS-RN or CHEBI/NCIT match. Curator review needed. |
| 2026-08-05T00:01:30.894952+00:00 | microbedecoder-residual-dispositions LLM | FLAGGED_NEEDS_EXPERT | NEEDS_EXPERT | Not a single-compound grounding target: multi-component blend or named medium; no single ontology term grounds it -- needs decomposition into constituents. |
| 2026-08-06T00:00:00+00:00 | edison_literature_identity LLM | ANNOTATED | Edison LITERATURE (PaperQA3) identity research; report at research/ingredients/BHI-edison-literature.md (local artifact — research/ is gitignored, so the findings are quoted here rather than linked). Report verdict: | Recommended status | **UNMAPPED** for single-ingredient identity curation, or retain a **non-identity formulation-family handling** if the data model supports named media/formulations. Do **not** map as a single chemical ingredient (le2023anewisolation pages 1-2, atlas2004handbookofmicrobiological pages 8-10) | No ontology CURIE was proposed. Recorded as provenance only — no grounding applied from this run. Edison's recommendations are deliberately conservative, and a plausible identifier promoted by a mechanism that never decided anything is what #203 and #263 exist to undo. Any CURIE above is a curator's to accept or reject. | |
| 2026-08-14T00:00:00+00:00 | apply_curated_decompositions | DECOMPOSED_FROM_CURATED_RESEARCH | MAPPED | UNMAPPED_0716 -> kgmicrobe.ingredient:bhi (FALLBACK_REGISTRY). Components taken from the curated microbedecoder research decomposition (mappings/microbedecoder_residual_research_decomposition.tsv, strategy=map_to_medium): it is a named medium and these are what the recipe contains. 1 constituent(s), 1 carrying an identifier. That file was produced by the research pass and never written into the records; this applies it. It resolves constituents a label split cannot — abbreviations such as PY, and named media such as BHI, state no composition to split on. ingredient_type=UNDEFINED_MIXTURE. No concentrations are recorded: the curated row states none. Cross-referenced to CultureMech medium CultureMech:015492 ('BHI') via culturemech_medium_name, verified by COMPOSITION not by name: composition Beef heart + Calf brains + Proteose Peptone + Disodium phosphate + Sodium Chloride is brain heart infusion. |
| 2026-08-15T00:00:00+00:00 | move_mapped_out_of_unmapped_collection | MOVED_TO_MAPPED_COLLECTION | Moved from unmapped_ingredients.yaml to mapped_ingredients.yaml (#370). The record was already MAPPED; it had been promoted in place by a path that does not move between collections, and reconcile_sssom reads only the mapped collection — so its mapping was curated but unpublished. | |
| 2026-08-24T00:00:00+00:00 | migrate_component_partonomy | REMOVED_NON_PARTONOMIC_COMPONENTS | #369: BHI to MICRO:0000193 brain heart infusion is a whole-medium identity/alias claim, not a has-part edge. The component was removed; identity cleanup must be handled separately. Replaced the active mapping evidence that described the false component claim; registry identity and ingredient type were not changed. | |
| 2026-08-27T18:00:01.744834+00:00 | migrate_culturemech_reference | CORRECTED | culturemech_medium_name='BHI' -> culturemech_reference CultureMech:015492 (EXACT_FORMULATION). The id was already in the evidence prose; a stable reference in a sentence is not a reference. Neither claim is strengthened: BHI was already composition-verified as the same formulation, GYPS was already recorded as close-but-not-identical (#447). | |
| 2026-09-21T00:00:00+00:00 | mim-semantic-evidence-review LLM | CORRECTED | #710: withdrew unsupported EXACT_FORMULATION equivalence to CultureMech:015492; retained the link only as CANDIDATE_UNVERIFIED because the source-specific BHI recipe and quantities were not compared. Original claim is preserved in the review audit. |