Ontology mapping
- Primary identifier
-
CHEBI:31345 - Ontology label
- Calcium pantothenate
Nutritional roles
- Role
- VITAMIN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference text
- CultureMech database (137 occurrences as 'Vitamin')
- Reference type
- DATABASE_ENTRY
- Url
- https://github.com/CultureBotAI/CultureMech
- Excerpt
- Role: Vitamin; Properties: Organic compound, Defined component, Simple component
- Curator note
- Widespread use in media formulations (137 occurrences). High confidence based on 'Defined component' property.
Synonyms (4)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Vitamin; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Vitamin; Properties: Simple component, Organic compound, Defined component | RAW_TEXT | CultureMech | |
| 3-[(2R)-2,4-dihydroxy-3,3-dimethylbutanamido]propanoate | EXACT_SYNONYM | kg_microbe | |
| Ca pantotenate | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 137-08-6
- Data source
- PubChem API (preprocessed)
- Retrieval date
- 2026-04-05T23:43:20.164598+00:00
- Molecular formula
- C9H16NO5
- Inchi
- InChI=1S/C9H17NO5/c1-9(2,5-11)7(14)8(15)10-4-3-6(12)13/h7,11,14H,3-5H2,1-2H3,(H,10,15)(H,12,13)/p-1/t7-/m0/s1
- Smiles
- CC(C)(CO)[C@@H](O)C(=O)NCCC(=O)[O-]
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T23:43:20.164608+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:137-08-6 from PubChem API (preprocessed) via name preprocessing (Ca-pantothenate) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 2 synonyms from kg-microbe P4.4 enrichment: 3-[(2R)-2,4-dihydroxy-3,3-dimethylbutanamido]propanoate, Ca pantotenate |
| 2026-05-01T07:35:32.484560+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:28.301871+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C9H16NO5; inchi=InChI=1S/C9H17NO5/c1-9(2,5-11)7(14)8(15)10-4-3-6(1; smiles=CC(C)(CO)[C@@H](O)C(=O)NCCC(=O)[O-] | |
| 2026-05-02T03:12:12.936758+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.110299+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: VITAMIN_SOURCE (confidence: 1.00) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): VITAMIN_SOURCE -> nutritional_roles.VITAMIN_SOURCE | |
| 2026-08-10T00:00:00+00:00 | regrade_synonym_matches | REGRADED_EXACT_TO_SYNONYM | mapping_quality EXACT_MATCH -> SYNONYM_MATCH (#317). The record's label does not equal the term's primary label '(R)-pantothenate'; it matches the ChEBI synonym '3-[(2R)-2,4-dihydroxy-3,3-dimethylbutanamido]propanoate' on CHEBI:29032. The schema defines EXACT_MATCH as a direct match to the term and SYNONYM_MATCH as a match to a known synonym, so the recorded grade overstated. ontology_id is unchanged — the term is correct. The SSSOM predicate is unaffected (both grades emit skos:exactMatch). | |
| 2026-08-10T00:00:00+00:00 | merge_salt_label_duplicates | MERGED_INTO | Merged into CHEBI:31345 'Calcium pantothenate'; occurrences transferred. Tombstoned REJECTED, SSSOM rows dropped. Same substance under two names — the abbreviated `Ca-` prefix is why the earlier merge pass missed it (#315). | |
| 2026-08-15T00:00:00+00:00 | fix_tombstone_pointers | REFRESHED_TOMBSTONE_ONTOLOGY_ID | ontology_id CHEBI:29032 -> CHEBI:31345 (#360). The merge set identifier and status but left ontology_mapping untouched, so this tombstone kept advertising a term it no longer asserts — anything indexing by ontology_id routed through it. Now agrees with the merge target 'Calcium pantothenate'. Provenance is unaffected: what the record used to assert is in this history. |