Ontology mapping
- Primary identifier
-
kgmicrobe.compound:cecl3_x_7_h2o - Ontology term
-
CHEBI:35458— cerium trichloride - Ontology label
- cerium trichloride
Nutritional roles
- Role
- TRACE_ELEMENT
- Confidence
- 0.6
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Assigned by in-session Claude reasoning (no external API)
- Curator note
- Provisional in-session LLM role assignment; review recommended.
Rejected enrichment labels (3)
Provenance-only candidates: these are not synonyms and do not resolve to this record.
| Rejected label | Disposition | Source | Occurrences |
|---|---|---|---|
| cerium(3+) chloride | REJECTED_LABEL | chebi_synonym_review | |
| cerium(III) chloride | REJECTED_LABEL | chebi_synonym_review | |
| trichloridocerium | REJECTED_LABEL | chebi_synonym_review |
Chemical properties
- Data source
- PubChem (via CHEBI:35458)
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- CeCl3.7H2O
- Inchi
- InChI=1S/Ce.3ClH/h;3*1H/q+3;;;/p-3
- Smiles
- [Cl][Ce]([Cl])[Cl]
Evidence (4)
[HISTORICAL — superseded by the #321 re-grade below: this record is a hydrate of CHEBI:35458, not an exact match to it] Imported from CultureMech pipeline, quality=DIRECT_MATCH
identifier CHEBI:35458 -> kgmicrobe.compound:cecl3_x_7_h2o; mapping_quality EXACT_MATCH -> NARROW_MATCH. The record is a hydrate of CHEBI:35458 ('cerium trichloride') and was sharing that term's identifier — the identity collapse MAPPING_SEMANTICS §3 forbids, which made a distinct substance indistinguishable from its anhydrous parent downstream. ChEBI has no term for this hydrate and the record carries no verified CAS, so steps 1 and 2 are unavailable and step 3 applies.
molecular_formula 'CeCl3' -> 'CeCl3.7H2O'. The recorded value described the anhydrous salt while the label names a hydrate, understating the mass by 18 g/mol per water. Corrected because the label states 7 water(s) of hydration, and the recorded formula was byte-identical to the anhydrous parent CHEBI:35458's ChEBI formula ('CeCl3') — the mark of a value inherited from the parent rather than measured for this record. Water appended in ChEBI's own dot-separated notation.
mapping_quality NARROW_MATCH -> CLOSE_MATCH, predicate skos:narrowMatch -> skos:closeMatch. narrowMatch asserts this record is *narrower in meaning* than CHEBI:35458 ('cerium trichloride') — a subsumption ChEBI itself denies: it files hydrates under CHEBI:35505 'hydrate', never under the anhydrous compound, which is not an ancestor even transitively. A hydrate is a distinct substance containing the anhydrous form, not a specialization of it. closeMatch claims similarity without subsumption. The ontology_id and the record's own identifier are unchanged.
Occurrence statistics
- Total occurrences
- 4
- Distinct media
- 4
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 7790-86-5 from PubChem (via CHEBI:35458) |
| 2026-05-01T07:35:32.670269+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:28.491723+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=CeCl3; inchi=InChI=1S/Ce.3ClH/h;3*1H/q+3;;;/p-3; smiles=[Cl][Ce]([Cl])[Cl] | |
| 2026-05-02T03:12:13.189956+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-06-09T04:56:30.247812+00:00 | claude_in_session_curation | ANNOTATED | Added media role: TRACE_ELEMENT (confidence: 0.60) | |
| 2026-06-09T05:23:46.736943+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'CeCl3 x 7 H2O' -> 'cerium trichloride': synced to canonical CHEBI label (preferred_term 'CeCl3 x 7 H2O' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): TRACE_ELEMENT -> nutritional_roles.TRACE_ELEMENT | |
| 2026-08-13T00:00:00+00:00 | mint_hydrate_registry_terms | MINTED_REGISTRY_FOR_HYDRATE | identifier CHEBI:35458 -> kgmicrobe.compound:cecl3_x_7_h2o; mapping_quality EXACT_MATCH -> NARROW_MATCH (#321/#334); §3 step 3. | |
| 2026-08-13T00:00:00+00:00 | add_water_of_hydration | ADDED_WATER_OF_HYDRATION | molecular_formula 'CeCl3' -> 'CeCl3.7H2O' (#321); the label states 7 water(s) of hydration, and the recorded formula was byte-identical to the anhydrous parent CHEBI:35458's ChEBI formula ('CeCl3') — the mark of a value inherited from the parent rather than measured for this record. Water appended in ChEBI's own dot-separated notation. | |
| 2026-08-13T00:00:00+00:00 | regrade_hydrate_to_close_match | REGRADED_HYDRATE_TO_CLOSE_MATCH | mapping_quality NARROW_MATCH -> CLOSE_MATCH (#342); a hydrate is not subsumed by its anhydrous form, and ChEBI does not model it as such. | |
| 2026-08-27T03:16:39.518539+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 2/2 -> 4/4 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-08-29T04:18:06.717442+00:00 | hydrate_family_cas | CORRECTED | cas_rn 7790-86-5 REMOVED, not replaced: it is the anhydrous CeCl3 CAS, and this record names a hydrate -- a different substance with a different formula weight. ChEBI has no term for this hydration state, so no authoritative value can be substituted. The grounding is separately wrong (#321); this corrects only the CAS (#334). | |
| 2026-09-22T20:41:14.285965+00:00 | claude LLM | REJECTED_PARENT_NAME_SYNONYMS | Retyped names of the parent compound or of a different hydrate as provenance-only REJECTED_LABEL, because this record is a distinct salt, hydrate or tombstone form and the label index resolved the parent's name here (#232): 'cerium(3+) chloride'; 'cerium(III) chloride'; 'trichloridocerium'. Preserved original text and source metadata. No identity, mapping, role, or remaining-synonym claim was adjudicated. |