Ontology mapping
- Primary identifier
-
kgmicrobe.compound:cephamycin_a - Ontology term
-
CHEBI:55429— cephamycin - Ontology label
- cephamycin
Physicochemical roles
- Role
- SELECTIVE_AGENT
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
Rejected enrichment labels (1)
Provenance-only candidates: these are not synonyms and do not resolve to this record.
| Rejected label | Disposition | Source | Occurrences |
|---|---|---|---|
| produces: cephamycin A | REJECTED_LABEL | sssom_other_backfill |
Chemical properties
- Molecular formula
- C8H7NO4SR2
- Smiles
- *C1=C(C(=O)O)N2C(=O)[C@](*)(OC)C2SC1
- Data source
- CHEBI sqlite (oaklib)
Evidence (2)
DATABASE_MATCH
via kg-microbe metatraits unmapped_compounds.tsv
Imported from kg-microbe's unmapped placeholder namespace. Ingested into MIM's pipeline; confidence=LOW; rationale=5 candidates; top OLS candidates: CHEBI:55429(cephamycin), CHEBI:3543(cephamycin C), CHEBI:199303(A83094A). Pending curator promotion to a CHEBI/NCIT primary identifier.
DATABASE_MATCH
via CHEBI via OLS (label-exact)
Parent class identified via label-exact; matched_via='Cephamycin'
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-26T04:54:19.839959+00:00 | audit_curate_unmapped_kgm_antibiotics | CREATED_FROM_KGM_PLACEHOLDER | MAPPED | Created MIM record from kg-microbe placeholder kgmicrobe.compound:cephamycin_a; OLS search across CHEBI+NCIT returned LOW-confidence (5 candidates). Identifier kept as kgmicrobe.compound: until upstream curation finds a CHEBI/NCIT primary. |
| 2026-05-01T07:35:32.720965+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (kgmicrobe.compound placeholder (defined)) | |
| 2026-05-02T03:12:13.272804+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (kgmicrobe.compound placeholder (defined)) | |
| 2026-05-02T05:11:54.860428+00:00 | backfill_parent_terms | BACKFILL_PARENT_CHEBI | set ontology_mapping parent=CHEBI:55429 (label-exact) | |
| 2026-05-02T23:59:50.012875+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C8H7NO4SR2; smiles=*C1=C(C(=O)O)N2C(=O)[C@](*)(OC)C2SC1 | |
| 2026-06-02T07:05:13.387385+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: SELECTIVE_AGENT (confidence: 0.80) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): SELECTIVE_AGENT -> physicochemical_roles.SELECTIVE_AGENT | |
| 2026-09-02T17:40:44.716277+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 1 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: 'produces: cephamycin A'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). | |
| 2026-09-22T06:14:49.563933+00:00 | claude LLM | REJECTED_TRAIT_SYNONYMS | Retyped activity/assay phrases as provenance-only REJECTED_LABEL because they describe a process or organism trait, not an ingredient name (#703): 'produces: cephamycin A'. Preserved original text and source metadata. No identity, mapping, role, or remaining-synonym claim was adjudicated. |