Ontology mapping
- Primary identifier
-
CHEBI:15356 - Ontology label
- cysteine
Nutritional roles
- Role
- NITROGEN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Nitrogen Source
Synonyms (12)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Nitrogen source; Properties: Defined component, Organic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Nitrogen source; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech | |
| Role: Nitrogen source; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Nitrogen source; Properties: Organic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| Role: Nitrogen source; Properties: Simple component, Organic compound, Defined component | RAW_TEXT | CultureMech | |
| 2-Amino-3-mercaptopropionic acid | EXACT_SYNONYM | kg_microbe | |
| 2-amino-3-mercaptopropanoic acid | EXACT_SYNONYM | kg_microbe | |
| 2-amino-3-sulfanylpropanoic acid | EXACT_SYNONYM | kg_microbe | |
| Cystein | EXACT_SYNONYM | kg_microbe | |
| Hcys | EXACT_SYNONYM | kg_microbe | |
| Zystein | EXACT_SYNONYM | kg_microbe | |
| cisteina | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 3374-22-9
- Data source
- PubChem (via CHEBI:15356)
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- C3H7NO2S
- Inchi
- InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)
- Smiles
- NC(CS)C(=O)O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 51
- Distinct media
- 51
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:39.769170+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:52-90-4 from PubChem API via name lookup (Cystein) |
| 2026-04-05T23:44:02.487622+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:52-90-4 from PubChem API (ontology label) via name preprocessing (cysteine) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 3374-22-9 from PubChem (via CHEBI:15356) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 7 synonyms from kg-microbe P4.4 enrichment: 2-Amino-3-mercaptopropionic acid, 2-amino-3-mercaptopropanoic acid, 2-amino-3-sulfanylpropanoic acid, Cystein, Hcys, ... (2 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: 2-Amino-3-mercaptopropionic acid, 2-amino-3-mercaptopropanoic acid, 2-amino-3-sulfanylpropanoic acid, Hcys, Zystein, ... (1 more) |
| 2026-04-19T07:39:40.088622+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 2 duplicate MIM record(s) into this one: Cysteine_2.yaml, Cystein.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-04-19T07:39:40.088267+00:00 | audit_resolve_risky_cas_rn | RESOLVED_CAS_RN_CONFLICT | MAPPED | CAS-RN conflict across merged group (3374-22-9|52-90-4) resolved via OAK canonical xref: 3374-22-9 (match) |
| 2026-05-01T07:35:33.022961+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:28.933141+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C3H7NO2S; inchi=InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,; smiles=NC(CS)C(=O)O | |
| 2026-05-02T03:12:13.682682+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.110834+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: NITROGEN_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.748148+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Cysteine' -> 'cysteine': synced to canonical CHEBI label (preferred_term 'Cysteine' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): NITROGEN_SOURCE -> nutritional_roles.NITROGEN_SOURCE | |
| 2026-08-27T03:16:39.518675+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 44/44 -> 51/51 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |