Ontology mapping
- Primary identifier
-
CHEBI:16988 - Ontology label
- D-ribose
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from CHEBI ancestry: subclass/has_role of CHEBI:16646 (carbohydrate)
- Curator note
- Provisional role inferred from CHEBI is_a/has_role closure; review recommended.
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (3)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| D-ribo-pentose | EXACT_SYNONYM | chebi_synonym_review | |
| (+)-l-rhamnose | RAW_TEXT | sssom_other_backfill | |
| (-)-d-rhamnose | RAW_TEXT | sssom_other_backfill |
Chemical properties
- Cas rn
- 50-69-1
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-29T06:04:17.380972+00:00
- Molecular formula
- C5H10O5
Evidence (1)
DATABASE_MATCH
via CultureBotHT
Imported from CultureBotHT. FEBA/Hans80 panels: FEBA_carbon.
Occurrence statistics
- Total occurrences
- 1
- Distinct media
- 1
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-29T06:04:17.380972+00:00 | audit_integrate_culturebotht | CREATED_FROM_CULTUREBOTHT | MAPPED | Created from CultureBotHT compounds_to_cas.csv (CAS=50-69-1); Imported from CultureBotHT. FEBA/Hans80 panels: FEBA_carbon. |
| 2026-05-01T07:35:33.102855+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:29.023692+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C5H10O5 | |
| 2026-05-02T03:12:13.797846+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-30T00:34:39.362194+00:00 | infer_roles_from_chebi_ancestry | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.70) | |
| 2026-06-04T05:38:59.200629+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-27T03:16:39.518689+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 0/0 -> 1/1 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-02T17:40:44.716277+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 1 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: '(+)-l-rhamnose'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). | |
| 2026-09-02T22:41:49.137449+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 1 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: '(-)-d-rhamnose'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). |