Ontology mapping
- Primary identifier
-
cas:56-82-6 - Ontology term
-
CHEBI:5445— glyceraldehyde - Ontology label
- glyceraldehyde
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from CHEBI ancestry: subclass/has_role of CHEBI:16646 (carbohydrate)
- Curator note
- Provisional role inferred from CHEBI is_a/has_role closure; review recommended.
Rejected enrichment labels (1)
Provenance-only candidates: these are not synonyms and do not resolve to this record.
| Rejected label | Disposition | Source | Occurrences |
|---|---|---|---|
| 2,3-dihydroxypropanal | REJECTED_LABEL | chebi_synonym_review |
Chemical properties
- Data source
- CultureBotHT compounds_to_cas.csv; PubChem CID 751
- Retrieval date
- 2026-09-12T00:00:00+00:00
- Molecular formula
- C3H6O3
- Cas rn
- 56-82-6
- Pubchem cid
- 751
- Inchi
- InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2
- Smiles
- [H]C(=O)C(O)CO
Evidence (2)
DATABASE_MATCH
via CultureBotHT
SUPERSEDED (#456): the CAS-selected ChEBI term denotes a different stereochemical form. Original note follows. Imported from CultureBotHT. CAS-RN→CHEBI mapping resolved via OAK CHEBI sqlite (cas xref).
CURATOR_JUDGMENT
via MIM curation (#456)
The CultureBotHT label and CAS-RN name the DL/racemic form, while CHEBI:5445 is stereo-unspecified and has separate D and L children. No exact local ChEBI term denotes the racemate. Per MAPPING_SEMANTICS.md Section 3, the record now uses cas:56-82-6 as the exact registry identity plus a narrowMatch to CHEBI:5445.
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-29T06:34:31.158938+00:00 | audit_cas_chebi_followup | CREATED_FROM_CAS_LOOKUP | MAPPED | Created from CultureBotHT CAS-RN=56-82-6; CHEBI resolved via OAK CHEBI sqlite (cas xref); Imported from CultureBotHT. CAS-RN→CHEBI mapping resolved via OAK CHEBI sqlite (cas xref). |
| 2026-05-01T07:35:33.191103+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:29.124306+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C3H6O3; inchi=InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2; smiles=[H]C(=O)C(O)CO | |
| 2026-05-02T03:12:13.917987+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-30T00:34:39.373626+00:00 | infer_roles_from_chebi_ancestry | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.70) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE | |
| 2026-08-10T00:00:00+00:00 | regrade_synonym_matches | REGRADED_EXACT_TO_SYNONYM | mapping_quality EXACT_MATCH -> SYNONYM_MATCH (#317). The record's label does not equal the term's primary label 'glyceraldehyde'; it matches the ChEBI synonym 'DL-glyceraldehyde' on CHEBI:5445. The schema defines EXACT_MATCH as a direct match to the term and SYNONYM_MATCH as a match to a known synonym, so the recorded grade overstated. ontology_id is unchanged — the term is correct. The SSSOM predicate is unaffected (both grades emit skos:exactMatch). | |
| 2026-09-12T00:00:00+00:00 | fix_cas_stereochemical_identity_conflicts | REGROUNDED_STEREOCHEMICAL_FORM | MAPPED | identifier CHEBI:5445 -> cas:56-82-6; ontology mapping set to NARROW_MATCH CHEBI:5445 ('glyceraldehyde'). Replaced target-derived chemistry and marked 1 inherited ChEBI synonym(s) as REJECTED_LABEL (#456). |