Ontology mapping
- Primary identifier
-
CHEBI:23673 - Ontology label
- 2,6-diaminopimelic acid
Nutritional roles
- Role
- AMINO_ACID_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from CHEBI ancestry: subclass/has_role of CHEBI:33709 (amino acid)
- Curator note
- Provisional role inferred from CHEBI is_a/has_role closure; review recommended.
Synonyms (1)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| 2,6-diaminoheptanedioic acid | EXACT_SYNONYM | chebi_synonym_review |
Chemical properties
- Cas rn
- 583-93-7
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:51:49.581961+00:00
- Molecular formula
- C7H14N2O4
- Smiles
- NC(CCCC(N)C(=O)O)C(=O)O
- Inchi
- InChI=1S/C7H14N2O4/c8-4(6(10)11)2-1-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13)
- Molecular weight
- 190.199
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 6
- Distinct media
- 6
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:49.582023+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:583-93-7 from PubChem API via name lookup (Diaminopimelic acid) |
| 2026-05-01T07:35:33.244828+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-02T03:12:13.990556+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-06-10T06:49:42.119070+00:00 | fix_dead_chebi_ids.py | CORRECTED | identifier CHEBI:23674 -> CHEBI:23673 (2,6-diaminopimelic acid, source CHEBI): CHEBI:23674 is absent from current ChEBI (OLS4 404). | |
| 2026-06-14T06:54:43.083520+00:00 | infer_roles_from_chebi_ancestry | ANNOTATED | Added media role: AMINO_ACID_SOURCE (confidence: 0.70) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): AMINO_ACID_SOURCE -> nutritional_roles.AMINO_ACID_SOURCE | |
| 2026-08-10T00:00:00+00:00 | regrade_synonym_matches | REGRADED_EXACT_TO_SYNONYM | mapping_quality EXACT_MATCH -> SYNONYM_MATCH (#317). The record's label does not equal the term's primary label '2,6-diaminopimelic acid'; it matches the ChEBI synonym 'Diaminopimelic acid' on CHEBI:23673. The schema defines EXACT_MATCH as a direct match to the term and SYNONYM_MATCH as a match to a known synonym, so the recorded grade overstated. ontology_id is unchanged — the term is correct. The SSSOM predicate is unaffected (both grades emit skos:exactMatch). | |
| 2026-08-27T03:16:39.518728+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 4/4 -> 6/6 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |