Fermented Rumen Extract

kgmicrobe.ingredient:fermented_rumen_extract complex MAPPED kgmicrobe.ingredient FALLBACK_REGISTRY

Ontology mapping

Primary identifier
kgmicrobe.ingredient:fermented_rumen_extract
Notes
Imported from microbedecoder (source_id=kgmicrobe.trait:fermented_rumen_extract); no CAS-RN or CHEBI/NCIT match. Curator review needed.

Synonyms (1)

SynonymTypeSourceOccurrences
Fermented Rumen Extract RAW_TEXT microbedecoder

Evidence (1)

MANUAL_CURATION via MIM curation (#369)

Registry identity retained while the whole-record grounding is reviewed separately. Corrected prior active evidence: Clarified rumen fluid is a related source material/interpretation, not an asserted physical constituent of fermented rumen extract.

Occurrence statistics

Total occurrences
0
Distinct media
0
Source occurrences
  • Source
    microbedecoder
    Count
    3
    Source columns
    BacDive_Metabolite_utilization

Curation history

TimestampCuratorActionNew statusChanges
2026-08-04T02:54:09.684805+00:00 audit_import_ingredients[microbedecoder] CREATED_AS_UNMAPPED UNMAPPED Imported from microbedecoder (source_id=kgmicrobe.trait:fermented_rumen_extract); no CAS-RN or CHEBI/NCIT match. Curator review needed.
2026-08-05T00:01:30.894952+00:00 microbedecoder-residual-dispositions LLM FLAGGED_NEEDS_EXPERT NEEDS_EXPERT Not a single-compound grounding target: multi-component blend or named medium; no single ontology term grounds it -- needs decomposition into constituents.
2026-08-06T00:00:00+00:00 edison_literature_identity LLM ANNOTATED Edison LITERATURE (PaperQA3) identity research; report at research/ingredients/Fermented_Rumen_Extract-edison-literature.md (local artifact — research/ is gitignored, so the findings are quoted here rather than linked). Report verdict: **Recommended interpretation:** a **processed, source-dependent biological mixture used as a complex culture-medium component**, not a single chemical, salt/hydrate, buffer, or standardized commercial formulation. The closest source-backed term is **“pre-fermented rumen fluid.”** In termite-gut spirochete enrichment, prior fermentation was used to reduce readily fermentable carbohydrates and there No ontology CURIE was proposed. Recorded as provenance only — no grounding applied from this run. Edison's recommendations are deliberately conservative, and a plausible identifier promoted by a mechanism that never decided anything is what #203 and #263 exist to undo. Any CURIE above is a curator's to accept or reject.
2026-08-14T00:00:00+00:00 apply_curated_decompositions DECOMPOSED_FROM_CURATED_RESEARCH MAPPED UNMAPPED_0711 -> kgmicrobe.ingredient:fermented_rumen_extract (FALLBACK_REGISTRY). Components taken from the curated microbedecoder research decomposition (mappings/microbedecoder_residual_research_decomposition.tsv, strategy=map_to_ingredient): it resolves to a single named ingredient. 1 constituent(s), 1 carrying an identifier. That file was produced by the research pass and never written into the records; this applies it. It resolves constituents a label split cannot — abbreviations such as PY, and named media such as BHI, state no composition to split on. ingredient_type=UNDEFINED_MIXTURE. No concentrations are recorded: the curated row states none.
2026-08-15T00:00:00+00:00 move_mapped_out_of_unmapped_collection MOVED_TO_MAPPED_COLLECTION Moved from unmapped_ingredients.yaml to mapped_ingredients.yaml (#370). The record was already MAPPED; it had been promoted in place by a path that does not move between collections, and reconcile_sssom reads only the mapped collection — so its mapping was curated but unpublished.
2026-08-24T00:00:00+00:00 migrate_component_partonomy REMOVED_NON_PARTONOMIC_COMPONENTS #369: Clarified rumen fluid is a related source material/interpretation, not an asserted physical constituent of fermented rumen extract. Replaced the active mapping evidence that described the false component claim; registry identity and ingredient type were not changed.