Ontology mapping
- Primary identifier
-
CHEBI:17189 - Ontology label
- 2,5-dihydroxybenzoic acid
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.6
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Assigned by in-session Claude reasoning (no external API)
- Curator note
- Provisional in-session LLM role assignment; review recommended.
Synonyms (6)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| (sodium salt) | RAW_TEXT | CultureMech | |
| 2,5-Dihydroxybenzoic acid | EXACT_SYNONYM | kg_microbe | |
| 5-hydroxysalicylic acid | EXACT_SYNONYM | kg_microbe | |
| Hydroquinonecarboxylic acid | EXACT_SYNONYM | kg_microbe | |
| 2,5-Dihydroxybenzoate | EXACT_SYNONYM | chebi_synonym_review | |
| Gentisate | RAW_TEXT | microbedecoder |
Chemical properties
- Cas rn
- 490-79-9
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:52:14.048460+00:00
- Molecular formula
- C7H6O4
- Inchi
- InChI=1S/C7H6O4/c8-4-1-2-6(9)5(3-4)7(10)11/h1-3,8-9H,(H,10,11)
- Smiles
- O=C(O)c1cc(O)ccc1O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 3
- Distinct media
- 3
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:52:14.048504+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:490-79-9 from PubChem API via name lookup (Gentisic acid) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 3 synonyms from kg-microbe P4.4 enrichment: 2,5-Dihydroxybenzoic acid, 5-hydroxysalicylic acid, Hydroquinonecarboxylic acid |
| 2026-05-01T07:35:33.763131+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:29.726572+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C7H6O4; inchi=InChI=1S/C7H6O4/c8-4-1-2-6(9)5(3-4)7(10)11/h1-3,8-; smiles=O=C(O)c1cc(O)ccc1O | |
| 2026-05-02T03:12:14.668221+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-06-09T04:56:30.247923+00:00 | claude_in_session_curation | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.60) | |
| 2026-06-09T05:23:46.768404+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Gentisic acid' -> '2,5-dihydroxybenzoic acid': synced to canonical CHEBI label (preferred_term 'Gentisic acid' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE | |
| 2026-08-06T04:28:16.724447+00:00 | issue_213_grounding LLM | MERGED_FROM_UNMAPPED_DUPLICATE | Absorbed UNMAPPED_0692 'Gentisate' as a RAW_TEXT synonym -- Gentisate is the conjugate base of gentisic acid (2,5-dihydroxybenzoic acid); CHEBI has no separate gentisate anion term, so the acid record is the home (#213). No new SSSOM row; CHEBI:17189 is already mapped. Source: kgmicrobe.trait:gentisate. | |
| 2026-08-27T03:16:39.518928+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 2/2 -> 3/3 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |