Ontology mapping
- Primary identifier
-
CHEBI:17234 - Ontology label
- glucose
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference text
- CultureMech database (1638 occurrences as 'Carbon source')
- Reference type
- DATABASE_ENTRY
- Url
- https://github.com/CultureBotAI/CultureMech
- Excerpt
- Role: Carbon source; Properties: Defined component, Organic compound, Simple component
- Curator note
- Widespread use in media formulations (1638 occurrences). High confidence based on 'Defined component' property.
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (14)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Carbon source; Properties: Defined component, Organic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Defined component, Organic compound, Solution | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Organic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| (2R,3S,4R,5R)-2,3,4,5,6-pentahydroxyhexanal | EXACT_SYNONYM | kg_microbe | |
| D-GLUCOSE IN LINEAR FORM | EXACT_SYNONYM | kg_microbe | |
| DL-glucose | EXACT_SYNONYM | kg_microbe | |
| Dglucose | EXACT_SYNONYM | kg_microbe | |
| Glc | EXACT_SYNONYM | kg_microbe | |
| Glukose | EXACT_SYNONYM | kg_microbe | |
| aldehydo-D-gluco-hexose | EXACT_SYNONYM | kg_microbe | |
| gluco-hexose | EXACT_SYNONYM | kg_microbe | |
| glucose | RAW_TEXT | MERGED_FROM_CHEBI:42758 |
Rejected enrichment labels (2)
Provenance-only candidates: these are not synonyms and do not resolve to this record.
| Rejected label | Disposition | Source | Occurrences |
|---|---|---|---|
| fermentation: glucose | REJECTED_LABEL | kg_microbe | |
| α-D-Glucose | REJECTED_LABEL | kg_microbe |
Chemical properties
- Cas rn
- 50-99-7
- Data source
- CultureBotHT/compounds_to_cas.csv
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- C6H12O6
Evidence (2)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Removal of EGF from culture medium reduced growth rates and glucose/glutamine consumption in control HMECs despite limited changes in respiration and fatty acid synthesis, while the relative contribution of branched-chain amino acids to the TCA cycle and lipogenesis increased in the near-quiescent conditions.
Auto-proposed; curator should rephrase or remove.
Occurrence statistics
- Total occurrences
- 2,752
- Distinct media
- 2,675
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:52:15.035558+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:200-075-1 from PubChem API via name lookup (Glucose) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 50-99-7 from CultureBotHT/compounds_to_cas.csv |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 10 synonyms from kg-microbe P4.4 enrichment: (2R,3S,4R,5R)-2,3,4,5,6-pentahydroxyhexanal, D-GLUCOSE IN LINEAR FORM, DL-glucose, Dglucose, Glc, ... (5 more) |
| 2026-05-01T07:35:33.787412+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:29.748663+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C6H12O6 | |
| 2026-05-01T08:09:47.866150+00:00 | auto_classify_ingredient_type | APPLY_EVIDENCE_PROPOSAL | added pmid=33811729 from propose-evidence batch | |
| 2026-05-02T03:12:14.701733+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.111253+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 1.00) | |
| 2026-06-04T05:38:59.200814+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-06-09T05:23:46.768965+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Glucose' -> 'glucose': synced to canonical CHEBI label (preferred_term 'Glucose' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-13T00:00:00+00:00 | merge_glucose_family | MERGED_FROM | Absorbed 'glucose' (#320/#334), which sat on CHEBI:42758 ('aldehydo-D-glucose'). Merged because this record differs from the winner only in the case of its first letter, and was grounded to CHEBI:42758 'aldehydo-D-glucose' — the open-chain form — which a bare 'glucose' label does not name. Both records carry the same CAS 50-99-7 and the same formula C6H12O6. Four MIM records for glucose carried the identical CAS and formula while sitting on four different ChEBI terms, split only by where lexical matching landed. Occurrences 1638/50 + 34/34 -> 1672/84. Raw label kept as a RAW_TEXT synonym. | |
| 2026-08-27T03:16:39.518936+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 84/1672 -> 2675/2752 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-10T05:18:56Z | mediaingredientmech-agentic-curation LLM | CORRECTED | Marked anomer-specific Unicode-Greek synonym α-D-Glucose non-resolving; the alpha anomer is CHEBI:17925, not generic glucose CHEBI:17234 (#518). | |
| 2026-09-22T06:14:49.563933+00:00 | claude LLM | REJECTED_TRAIT_SYNONYMS | Retyped activity/assay phrases as provenance-only REJECTED_LABEL because they describe a process or organism trait, not an ingredient name (#703): 'fermentation: glucose'. Preserved original text and source metadata. No identity, mapping, role, or remaining-synonym claim was adjudicated. |