Ontology mapping
- Primary identifier
-
CHEBI:17234 - kg-microbe node
CHEBI:17234
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Carbon Source
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (8)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Carbon source; Properties: Defined component, Organic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Defined component, Organic compound, Solution | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Organic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| D-glucose | EXACT_SYNONYM | merged_from_duplicate_mim_record | |
| Role: Carbon source; Properties: Simple component, Defined component, Organic compound | RAW_TEXT | CultureMech | |
| aldehydo-D-gluco-hexose | EXACT_SYNONYM | chebi_synonym_review |
Chemical properties
- Cas rn
- 50-99-7
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-05T21:48:45.138286+00:00
- Molecular formula
- C6H12O6
- Inchi
- InChI=1S/C6H12O6/c7-1-3(9)5(11)6(12)4(10)2-8/h1,3-6,8-12H,2H2/t3-,4+,5+,6+/m0/s1
- Smiles
- [H]C(=O)[C@H](O)[C@@H](O)[C@H](O)[C@H](O)CO
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:43.471953+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:200-075-1 from PubChem API via name lookup (D-glucose) |
| 2026-04-05T21:48:45.138289+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:50-99-7 from CultureBotHT compounds_to_cas.csv (matched: glucose) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 50-99-7 from CultureBotHT/compounds_to_cas.csv |
| 2026-04-19T07:39:23.955331+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 1 duplicate MIM record(s) into this one: D-glucose_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:33.792698+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:29.754061+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C6H12O6; inchi=InChI=1S/C6H12O6/c7-1-3(9)5(11)6(12)4(10)2-8/h1,3-; smiles=[H]C(=O)[C@H](O)[C@@H](O)[C@H](O)[C@H](O)CO | |
| 2026-05-02T03:12:14.708824+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.111261+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 1.00) | |
| 2026-06-04T05:38:59.200818+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-13T00:00:00+00:00 | merge_glucose_family | MERGED_INTO | Merged into CHEBI:17234 'Glucose'; occurrences transferred. Was on CHEBI:42758 ('aldehydo-D-glucose'); this record differs from the winner only in the case of its first letter, and was grounded to CHEBI:42758 'aldehydo-D-glucose' — the open-chain form — which a bare 'glucose' label does not name. Both records carry the same CAS 50-99-7 and the same formula C6H12O6. Tombstoned REJECTED, SSSOM rows dropped (#320/#334). | |
| 2026-08-15T00:00:00+00:00 | fix_tombstone_pointers | REFRESHED_TOMBSTONE_ONTOLOGY_ID | ontology_id CHEBI:42758 -> CHEBI:17234 (#360). The merge set identifier and status but left ontology_mapping untouched, so this tombstone kept advertising a term it no longer asserts — anything indexing by ontology_id routed through it. Now agrees with the merge target 'Glucose'. Provenance is unaffected: what the record used to assert is in this history. | |
| 2026-09-09T00:00:00+00:00 | fix_kg_microbe_node_id_drift | CORRECTED | kg_microbe_node_id CHEBI:42758 -> CHEBI:17234 (#554). The compatibility node id lagged a same-prefix identifier correction; the downstream node id must match the curated identifier unless a record intentionally crosses CURIE prefixes. |