Ontology mapping
- Primary identifier
-
CHEBI:33118 - Ontology label
- boric acid
- kg-microbe node
CHEBI:33118
Nutritional roles
- Role
- TRACE_ELEMENT
- Confidence
- 1.0
- Evidence
- Reference text
- CultureMech database (3729 occurrences as 'Mineral source')
- Reference type
- DATABASE_ENTRY
- Url
- https://github.com/CultureBotAI/CultureMech
- Excerpt
- Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
- Curator note
- Widespread use in media formulations (3729 occurrences). High confidence based on 'Defined component' property.
Synonyms (14)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Simple component, Defined component, Inorganic compound | RAW_TEXT | CultureMech | |
| B(OH)3 | EXACT_SYNONYM | kg_microbe | |
| [B(OH)3] | EXACT_SYNONYM | kg_microbe | |
| boron trihydroxide | EXACT_SYNONYM | kg_microbe | |
| orthoboric acid | EXACT_SYNONYM | kg_microbe | |
| trihydroxidoboron | EXACT_SYNONYM | kg_microbe | |
| Boric acid | EXACT_SYNONYM | merged_from_duplicate_mim_record | |
| H3BO | RAW_TEXT | merged_from_unmapped_duplicate_review_2026_05_11 | |
| H3BO3(Baker 0084) | RAW_TEXT | merged_from_unmapped_duplicate_review_2026_05_11 | |
| H BO | RAW_TEXT | sssom_other_backfill |
Chemical properties
- Cas rn
- 10043-35-3
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-05T21:48:45.161739+00:00
- Molecular formula
- H3BO3
- Inchi
- InChI=1S/BH3O3/c2-1(3)4/h2-4H
- Smiles
- [H]OB(O[H])O[H]
Evidence (2)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Plants take up soil B in the form of boric acid (H3BO3) in acidic soil or tetrahydroxy borate [B(OH)4]- at neutral or alkaline pH.
Auto-proposed; curator should rephrase or remove.
Occurrence statistics
- Total occurrences
- 4,216
- Distinct media
- 4,212
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:14.490801+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:10043-35-3 from PubChem API via name lookup (Boric acid) |
| 2026-04-05T21:48:44.770457+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:10043-35-3 from CultureBotHT compounds_to_cas.csv (matched: Boric Acid) |
| 2026-04-05T21:48:45.161744+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:10043-35-3 from CultureBotHT compounds_to_cas.csv (matched: H3BO3) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 5 synonyms from kg-microbe P4.4 enrichment: B(OH)3, [B(OH)3], boron trihydroxide, orthoboric acid, trihydroxidoboron |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: B(OH)3, H3BO3, [B(OH)3], boron trihydroxide, orthoboric acid, ... (1 more) |
| 2026-04-19T07:39:23.955331+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 2 duplicate MIM record(s) into this one: Boric_Acid.yaml, Boric_Acid_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:33.917465+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:29.887474+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=H3BO3; inchi=InChI=1S/BH3O3/c2-1(3)4/h2-4H; smiles=[H]OB(O[H])O[H] | |
| 2026-05-01T08:09:47.874183+00:00 | auto_classify_ingredient_type | APPLY_EVIDENCE_PROPOSAL | added pmid=38410729 from propose-evidence batch | |
| 2026-05-02T03:12:14.892517+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-11T06:02:00Z | mediaingredientmech-agentic-curation LLM | ABSORBED_UNMAPPED_DUPLICATE | MAPPED | Absorbed duplicate unmapped record H3bo.yaml (UNMAPPED_0047); raw source synonym H3BO3(Baker 0084) resolves the truncated preferred term to boric acid CHEBI:33118. |
| 2026-05-29T23:35:36.111356+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: MINERAL (confidence: 1.00) | |
| 2026-06-09T05:23:46.772568+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'H3BO3' -> 'boric acid': synced to canonical CHEBI label (preferred_term 'H3BO3' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): MINERAL -> nutritional_roles.TRACE_ELEMENT | |
| 2026-08-27T03:16:39.518973+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 105/3729 -> 4212/4216 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-02T17:40:44.716277+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 1 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: 'H BO'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). |