Ontology mapping
- Primary identifier
-
CHEBI:65328 - Ontology label
- L-xylose
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from CHEBI ancestry: subclass/has_role of CHEBI:16646 (carbohydrate)
- Curator note
- Provisional role inferred from CHEBI is_a/has_role closure; review recommended.
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Chemical properties
- Cas rn
- 609-06-3
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-29T06:04:17.380972+00:00
- Molecular formula
- C5H10O5
Evidence (1)
DATABASE_MATCH
via CultureBotHT
Imported from CultureBotHT.
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-29T06:04:17.380972+00:00 | audit_integrate_culturebotht | CREATED_FROM_CULTUREBOTHT | MAPPED | Created from CultureBotHT compounds_to_cas.csv (CAS=0609-06-3); Imported from CultureBotHT. |
| 2026-05-01T07:35:34.279354+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:30.279944+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C5H10O5 | |
| 2026-05-02T03:12:15.421754+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-30T00:34:39.488299+00:00 | infer_roles_from_chebi_ancestry | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.70) | |
| 2026-06-04T05:38:59.200919+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-16T00:00:00+00:00 | strip_cas_leading_zeros | STRIPPED_CAS_LEADING_ZERO | chemical_properties.cas_rn 0609-06-3 -> 609-06-3 (#310). A CAS Registry Number never carries leading zeros, so the padded form resolved against nothing and any join on CAS-RN silently missed this record. The stripped value passes the CAS check digit and resolves on PubChem to exactly this compound; the padding was ingest alignment, not identity. |