Ontology mapping
- Primary identifier
-
CHEBI:17196 - Ontology label
- L-asparagine
- kg-microbe node
CHEBI:17196
Nutritional roles
- Role
- NITROGEN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Nitrogen Source
Synonyms (15)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Cross-references: KEGG:asn-L | RAW_TEXT | CultureMech | |
| Role: Nitrogen source; Properties: Defined component, Organic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Nitrogen source; Properties: Organic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| Role: Nitrogen source; Properties: Simple component, Organic compound, Defined component | RAW_TEXT | CultureMech | |
| (2S)-2,4-diamino-4-oxobutanoic acid | EXACT_SYNONYM | kg_microbe | |
| (2S)-2-amino-3-carbamoylpropanoic acid | EXACT_SYNONYM | kg_microbe | |
| (S)-2-amino-3-carbamoylpropanoic acid | EXACT_SYNONYM | kg_microbe | |
| (S)-Asparagine | EXACT_SYNONYM | kg_microbe | |
| 2-Aminosuccinamic acid | EXACT_SYNONYM | kg_microbe | |
| Aspartamic acid | EXACT_SYNONYM | kg_microbe | |
| L-2-aminosuccinamic acid | EXACT_SYNONYM | kg_microbe | |
| L-Asparagin | EXACT_SYNONYM | kg_microbe | |
| L-aspartic acid beta-amide | EXACT_SYNONYM | kg_microbe | |
| alpha-aminosuccinamic acid | EXACT_SYNONYM | kg_microbe | |
| ASPARAGINE | EXACT_SYNONYM | chebi_synonym_review |
Chemical properties
- Cas rn
- 70-47-3
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-05T21:48:45.242102+00:00
- Molecular formula
- C4H8N2O3
- Inchi
- InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1
- Smiles
- NC(=O)C[C@H](N)C(=O)O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 135
- Distinct media
- 135
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:52:37.192603+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:70-47-3 from PubChem API via name lookup (L-Asparagin) |
| 2026-04-05T21:48:45.242106+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:70-47-3 from CultureBotHT compounds_to_cas.csv (matched: L-Asparagine) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 10 synonyms from kg-microbe P4.4 enrichment: (2S)-2,4-diamino-4-oxobutanoic acid, (2S)-2-amino-3-carbamoylpropanoic acid, (S)-2-amino-3-carbamoylpropanoic acid, (S)-Asparagine, 2-Aminosuccinamic acid, ... (5 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 9 synonyms from kg-microbe P4.4 enrichment: (2S)-2,4-diamino-4-oxobutanoic acid, (2S)-2-amino-3-carbamoylpropanoic acid, (S)-2-amino-3-carbamoylpropanoic acid, (S)-Asparagine, 2-Aminosuccinamic acid, ... (4 more) |
| 2026-04-19T07:39:23.955331+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 1 duplicate MIM record(s) into this one: L-asparagin.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:34.304114+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:30.308841+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C4H8N2O3; inchi=InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2; smiles=NC(=O)C[C@H](N)C(=O)O | |
| 2026-05-02T03:12:15.454729+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.111604+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: NITROGEN_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.784234+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'L-Asparagine' -> 'L-asparagine': synced to canonical CHEBI label (preferred_term 'L-Asparagine' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): NITROGEN_SOURCE -> nutritional_roles.NITROGEN_SOURCE | |
| 2026-08-27T03:16:39.519119+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 55/69 -> 135/135 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |