Ontology mapping
- Primary identifier
-
CHEBI:15729 - Ontology label
- L-ornithine
- Notes
- Created from FEBA ontology enrichment workflow. Used in 10 FEBA media formulations.
Nutritional roles
- Role
- AMINO_ACID_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from CHEBI ancestry: subclass/has_role of CHEBI:33709 (amino acid)
- Curator note
- Provisional role inferred from CHEBI is_a/has_role closure; review recommended.
Synonyms (6)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| (2S)-2,5-diaminopentanoic acid | EXACT_SYNONYM | kg_microbe | |
| (S)-2,5-Diaminopentanoate | EXACT_SYNONYM | kg_microbe | |
| (S)-2,5-Diaminopentanoic acid | EXACT_SYNONYM | kg_microbe | |
| (S)-2,5-diaminovaleric acid | EXACT_SYNONYM | kg_microbe | |
| (S)-alpha,delta-diaminovaleric acid | EXACT_SYNONYM | kg_microbe | |
| (S)-ornithine | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 70-26-8
- Data source
- FEBA ontology enrichment (via PubChem)
- Retrieval date
- 2026-04-07T10:19:38.462443+00:00
- Molecular formula
- C5H12N2O2
- Inchi
- InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m0/s1
- Smiles
- NCCC[C@H](N)C(=O)O
Evidence (1)
CAS_RN_CROSS_REFERENCE
via PubChem
ChEBI ID CHEBI:15729 found via PubChem CAS-RN cross-reference
Occurrence statistics
- Total occurrences
- 11
- Distinct media
- 11
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-07T10:19:38.462433+00:00 | feba_ontology_enrichment_batch | CREATED | MAPPED | Created ingredient file from FEBA ontology enrichment batch with ChEBI ID CHEBI:15729 |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: (2S)-2,5-diaminopentanoic acid, (S)-2,5-Diaminopentanoate, (S)-2,5-Diaminopentanoic acid, (S)-2,5-diaminovaleric acid, (S)-alpha,delta-diaminovaleric acid, ... (1 more) |
| 2026-05-01T07:35:34.443627+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:30.461733+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C5H12N2O2; inchi=InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H; smiles=NCCC[C@H](N)C(=O)O | |
| 2026-05-02T03:12:15.638357+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-30T00:34:39.499848+00:00 | infer_roles_from_chebi_ancestry | ANNOTATED | Added media role: AMINO_ACID_SOURCE (confidence: 0.70) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): AMINO_ACID_SOURCE -> nutritional_roles.AMINO_ACID_SOURCE | |
| 2026-08-27T03:16:39.519192+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 10/10 -> 11/11 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |