Ontology mapping
- Primary identifier
-
kgmicrobe.ingredient:marine_agar_2216
Synonyms (1)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Marine agar 2216 (BD-Difco) | CATALOG_VARIANT | culturemech:output/ingredient_occurrences.tsv |
Evidence (1)
MANUAL_CURATION
via MIM curation (#260)
Minted under the #288 named-preparation convention (#260): Difco/BD Marine Agar 2216, ZoBell's seawater formulation. MICRO has `ZoBell marine agar` (MICRO:0000112) and `216L marine agar` (MICRO:0000064), but neither is verified to be the 2216 formulation and grounding to a maybe-equivalent named medium is how wrong identities enter. No ChEBI/FOODON term covers a compounded medium either, so §3 step 3 mints it under the #288 convention, as `Trace element solution see Medium No. 187` already is. Cross-reference: CultureMech:007629. A CultureMech id cannot be the identifier — MIM's primary key is an ontology CURIE or a registry mint — so it is carried here as evidence.
Material components
- Method
- RECIPE_TRANSCRIPTION
- Completeness
- COMPLETE
| Component | Identifier | Scope | Concentration |
|---|---|---|---|
| Peptone |
MICRO:0000178
|
MIM_CATALOG | 5.0 G_PER_L |
| Yeast Extract |
FOODON:03315426
|
MIM_CATALOG | 1.0 G_PER_L |
| Ferric Citrate |
CHEBI:144421
|
MIM_CATALOG | 0.1 G_PER_L |
| Sodium Chloride |
CHEBI:26710
|
MIM_CATALOG | 19.45 G_PER_L |
| Magnesium Chloride |
CHEBI:86345
|
MIM_CATALOG | 8.8 G_PER_L |
| Sodium Sulfate |
CHEBI:32149
|
MIM_CATALOG | 3.24 G_PER_L |
| Calcium Chloride |
CHEBI:3312
|
MIM_CATALOG | 1.8 G_PER_L |
| Potassium Chloride |
CHEBI:32588
|
MIM_CATALOG | 0.55 G_PER_L |
| Sodium Bicarbonate |
CHEBI:32139
|
MIM_CATALOG | 0.16 G_PER_L |
| Potassium Bromide |
CHEBI:32030
|
MIM_CATALOG | 0.08 G_PER_L |
| Strontium Chloride |
CHEBI:36383
|
MIM_CATALOG | 0.034 G_PER_L |
| Boric Acid |
CHEBI:33118
|
MIM_CATALOG | 0.022 G_PER_L |
| Sodium Silicate |
CHEBI:60720
|
MIM_CATALOG | 0.004 G_PER_L |
| Sodium Fluoride |
CHEBI:28741
|
MIM_CATALOG | 0.0024 G_PER_L |
| Ammonium Nitrate |
CHEBI:63038
|
MIM_CATALOG | 0.0016 G_PER_L |
| Disodium Phosphate |
CHEBI:34683
|
MIM_CATALOG | 0.008 G_PER_L |
| Agar |
CHEBI:2509
|
MIM_CATALOG | 15.0 G_PER_L |
| Distilled water |
CHEBI:15377
|
MIM_CATALOG | 1.0 L_PER_L |
Decomposition evidence
RECIPE_SOURCE
https://www.atcc.org/~/media/5a4142bda5cf458b9131902a1791833d.ashx
— ATCC Medium 2887 Marine Agar/Broth 2216 ATCC Medium 2887 lists the Difco Marine Agar 2216 scratch formula with peptone, yeast extract, ferric citrate, salts, agar, and distilled water per liter.
Occurrence statistics
- Total occurrences
- 32
- Distinct media
- 32
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-08-15T00:00:00+00:00 | add_culturemech_gap_labels | CREATED_FROM_CULTUREMECH_GAP | MAPPED | kgmicrobe.ingredient:marine_agar_2216 -> kgmicrobe.ingredient:marine_agar_2216 (FALLBACK_REGISTRY). Minted under the #288 named-preparation convention (#260): Difco/BD Marine Agar 2216, ZoBell's seawater formulation. MICRO has `ZoBell marine agar` (MICRO:0000112) and `216L marine agar` (MICRO:0000064), but neither is verified to be the 2216 formulation and grounding to a maybe-equivalent named medium is how wrong identities enter. No ChEBI/FOODON term covers a compounded medium either, so §3 step 3 mints it under the #288 convention, as `Trace element solution see Medium No. 187` already is. Cross-reference: CultureMech:007629. A CultureMech id cannot be the identifier — MIM's primary key is an ontology CURIE or a registry mint — so it is carried here as evidence. |
| 2026-08-27T03:16:39.518115+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 0/0 -> 32/32 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-08-30T04:48:06.233536+00:00 | claude_culturemech_alias_backfill | ADDED_SYNONYMS | Added 1 CultureMech recipe surface form(s) that folded onto this record's published label but were absent from MIM's label index, so CultureMech could not resolve them: 'Marine agar 2216 (BD-Difco)' (x6 CultureMech mentions). Source: culturemech:output/ingredient_occurrences.tsv. | |
| 2026-09-06T00:00:00+00:00 | mediaingredientmech-agentic-curation LLM | ANNOTATED | Added components and component_assertion by transcribing the ATCC Medium 2887 Difco Marine Agar 2216 scratch formula. |