Ontology mapping
- Primary identifier
-
CHEBI:28053 - Ontology label
- melibiose
- kg-microbe node
CHEBI:28053
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Carbon Source
Synonyms (11)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Carbon source; Properties: Simple component, Organic compound, Defined component | RAW_TEXT | CultureMech | |
| 6-O-(alpha-D-Galactopyranosyl)-D-glucopyranose | EXACT_SYNONYM | kg_microbe | |
| 6-O-alpha-D-galactopyranosyl-D-glucopyranose | EXACT_SYNONYM | kg_microbe | |
| D-Melibiose | EXACT_SYNONYM | kg_microbe | |
| D-melibiose (melibiose) | EXACT_SYNONYM | kg_microbe | |
| D-mellibiose | EXACT_SYNONYM | kg_microbe | |
| Gal-alpha(1,6)Glc | EXACT_SYNONYM | kg_microbe | |
| alpha-D-Gal-(1->6)-D-Glc | EXACT_SYNONYM | kg_microbe | |
| alpha-D-Galp-(1->6)-D-Glcp | EXACT_SYNONYM | kg_microbe | |
| alpha-D-galactopyranosyl-(1->6)-D-glucopyranose | EXACT_SYNONYM | kg_microbe | |
| alpha-D-galactosyl-(1->6)-D-glucose | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 585-99-9
- Data source
- CultureBotHT/compounds_to_cas.csv
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- C12H22O11
- Inchi
- InChI=1S/C12H22O11/c13-1-3-5(14)8(17)10(19)12(23-3)21-2-4-6(15)7(16)9(18)11(20)22-4/h3-20H,1-2H2/t3-,4-,5+,6-,7+,8+,9-,10-,11?,12+/m1/s1
- Smiles
- OC[C@H]1O[C@H](OC[C@H]2OC(O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 3
- Distinct media
- 3
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:52:53.755645+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:209-568-6 from PubChem API via name lookup (Melibiose) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 585-99-9 from CultureBotHT/compounds_to_cas.csv |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 10 synonyms from kg-microbe P4.4 enrichment: 6-O-(alpha-D-Galactopyranosyl)-D-glucopyranose, 6-O-alpha-D-galactopyranosyl-D-glucopyranose, D-Melibiose, D-melibiose (melibiose), D-mellibiose, ... (5 more) |
| 2026-05-01T07:35:34.649405+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:30.684053+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C12H22O11; inchi=InChI=1S/C12H22O11/c13-1-3-5(14)8(17)10(19)12(23-3; smiles=OC[C@H]1O[C@H](OC[C@H]2OC(O)[C@H](O)[C@@H](O)[C@@H | |
| 2026-05-02T03:12:16.271555+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.111798+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.793752+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Melibiose' -> 'melibiose': synced to canonical CHEBI label (preferred_term 'Melibiose' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE | |
| 2026-08-27T03:16:39.519270+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 2/2 -> 3/3 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |