Ontology mapping
- Primary identifier
-
CHEBI:28869 - Ontology label
- menadione
Nutritional roles
- Role
- VITAMIN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Vitamin Source
Synonyms (20)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Cross-references: KEGG:mndn | RAW_TEXT | CultureMech | |
| Role: Vitamin; Properties: Defined component, Organic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Vitamin; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech | |
| Vitamin K3 | EXACT | manual | |
| 2-Methyl-1,4-naphthochinon | EXACT_SYNONYM | kg_microbe | |
| 2-methyl-1,4-naphthalenedione | EXACT_SYNONYM | kg_microbe | |
| 2-methyl-1,4-naphthoquinone | EXACT_SYNONYM | kg_microbe | |
| 2-methylnaphthalene-1,4-dione | EXACT_SYNONYM | kg_microbe | |
| 2-methylnaphthoquinone | EXACT_SYNONYM | kg_microbe | |
| 3-methyl-1,4-naphthoquinone | EXACT_SYNONYM | kg_microbe | |
| Aquakay | EXACT_SYNONYM | kg_microbe | |
| Aquinone | EXACT_SYNONYM | kg_microbe | |
| Hemodal | EXACT_SYNONYM | kg_microbe | |
| Kappaxin | EXACT_SYNONYM | kg_microbe | |
| menadion | EXACT_SYNONYM | kg_microbe | |
| menaphthon | EXACT_SYNONYM | kg_microbe | |
| menaphthone | EXACT_SYNONYM | kg_microbe | |
| menaquinone 0 | EXACT_SYNONYM | kg_microbe | |
| Role: Vitamin; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Vitamin; Properties: Simple component, Organic compound, Defined component | RAW_TEXT | CultureMech |
Chemical properties
- Cas rn
- 58-27-5
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:52:54.436034+00:00
- Molecular formula
- C11H8O2
- Inchi
- InChI=1S/C11H8O2/c1-7-6-10(12)8-4-2-3-5-9(8)11(7)13/h2-6H,1H3
- Smiles
- CC1=CC(=O)c2ccccc2C1=O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 107
- Distinct media
- 107
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:52:54.436062+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:58-27-5 from PubChem API via name lookup (Menadione) |
| 2026-04-05T21:48:45.326854+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:58-27-5 from CultureBotHT compounds_to_cas.csv (matched: menadione) |
| 2026-04-17T12:00:00+00:00 | synonym_expansion_cbclaw LLM | ADDED_SYNONYMS | MAPPED | Added 1 synonym for unmapped CultureMech surface form |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 14 synonyms from kg-microbe P4.4 enrichment: 2-Methyl-1,4-naphthochinon, 2-methyl-1,4-naphthalenedione, 2-methyl-1,4-naphthoquinone, 2-methylnaphthalene-1,4-dione, 2-methylnaphthoquinone, ... (9 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 15 synonyms from kg-microbe P4.4 enrichment: 2-Methyl-1,4-naphthochinon, 2-methyl-1,4-naphthalenedione, 2-methyl-1,4-naphthoquinone, 2-methylnaphthalene-1,4-dione, 2-methylnaphthoquinone, ... (10 more) |
| 2026-04-19T07:39:23.955331+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 1 duplicate MIM record(s) into this one: Menadione_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:34.655960+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:30.691131+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C11H8O2; inchi=InChI=1S/C11H8O2/c1-7-6-10(12)8-4-2-3-5-9(8)11(7)1; smiles=CC1=CC(=O)c2ccccc2C1=O | |
| 2026-05-02T03:12:16.279713+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.111804+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: VITAMIN_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.793847+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Menadione' -> 'menadione': synced to canonical CHEBI label (preferred_term 'Menadione' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): VITAMIN_SOURCE -> nutritional_roles.VITAMIN_SOURCE | |
| 2026-08-27T03:16:39.519272+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 11/11 -> 107/107 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |