Ontology mapping
- Primary identifier
-
kgmicrobe.compound:mgcl2_x_7_h2o - Ontology term
-
CHEBI:6636— magnesium dichloride - Ontology label
- magnesium dichloride
Nutritional roles
- Role
- MINERAL_SOURCE
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
Synonyms (3)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| MgCl2 x 7H2O | HYDRATE_FORM | kg_microbe | |
| MgCl2x7H2O | HYDRATE_FORM | kg_microbe | |
| MgCl2 x 7 H2O | HYDRATE_FORM | kg_microbe_via_hydration_routing |
Rejected enrichment labels (5)
Provenance-only candidates: these are not synonyms and do not resolve to this record.
| Rejected label | Disposition | Source | Occurrences |
|---|---|---|---|
| Magnesium chloride anhydrous | REJECTED_LABEL | kg_microbe | |
| MgCl2 x 76 H2O | REJECTED_LABEL | kg_microbe | |
| MgCl2 X 6H2O | REJECTED_LABEL | kg_microbe | |
| MgCl2x 6 H2O | REJECTED_LABEL | kg_microbe | |
| MgCl2 x 6H2O | REJECTED_LABEL | kg_microbe |
Evidence (5)
[HISTORICAL — superseded by the #321 re-grade below: this record is a hydrate of CHEBI:6636, not an exact match to it] Imported from CultureMech pipeline, quality=DIRECT_MATCH
identifier CHEBI:6636 -> kgmicrobe.compound:mgcl2_x_7_h2o; mapping_quality SYNONYM_MATCH -> NARROW_MATCH. The record is a hydrate of CHEBI:6636 ('magnesium dichloride') and was sharing that term's identifier — the identity collapse MAPPING_SEMANTICS §3 forbids, which made a distinct substance indistinguishable from its anhydrous parent downstream. ChEBI has no term for this hydrate and the record carries no verified CAS, so steps 1 and 2 are unavailable and step 3 applies.
molecular_formula '2Cl.Mg' -> '2Cl.Mg.7H2O'. The recorded value described the anhydrous salt while the label names a hydrate, understating the mass by 18 g/mol per water. Corrected because the label states 7 water(s) of hydration, and the recorded formula was byte-identical to the anhydrous parent CHEBI:6636's ChEBI formula ('2Cl.Mg') — the mark of a value inherited from the parent rather than measured for this record. Water appended in ChEBI's own dot-separated notation.
mapping_quality NARROW_MATCH -> CLOSE_MATCH, predicate skos:narrowMatch -> skos:closeMatch. narrowMatch asserts this record is *narrower in meaning* than CHEBI:6636 ('magnesium dichloride') — a subsumption ChEBI itself denies: it files hydrates under CHEBI:35505 'hydrate', never under the anhydrous compound, which is not an ancestor even transitively. A hydrate is a distinct substance containing the anhydrous form, not a specialization of it. closeMatch claims similarity without subsumption. The ontology_id and the record's own identifier are unchanged.
mediadive.compound:632 still carries the source label 'MgCl2 x 7 H2O', but no exact ontology term or CAS has been verified for that stated hydration count. CHEBI:6636 (magnesium dichloride) is retained only as the closest anhydrous parent while the source label keeps its local kgmicrobe.compound identity.
Occurrence statistics
- Total occurrences
- 19
- Distinct media
- 19
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T21:54:34.984656+00:00 | fetch_cas_rn_from_cactus | ADDED_CAS_RN | MAPPED | Added CAS-RN:12285-34-6 from NCI CACTUS via name lookup (MgCl2 x 7 H2O) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 7 synonyms from kg-microbe P4.4 enrichment: Magnesium chloride anhydrous, MgCl2 x 76 H2O, MgCl2 X 6H2O, MgCl2 x 7H2O, MgCl2x 6 H2O, ... (2 more) |
| 2026-04-19T06:30:07.230267+00:00 | audit_p44_hydration_routing | ADDED_SYNONYMS_VIA_HYDRATION_ROUTING | MAPPED | Added 1 synonyms re-routed from anhydrous/hydrate sibling records (Mgcl2.yaml): MgCl2 x 7 H2O |
| 2026-05-01T07:35:34.763851+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:30.804634+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=2Cl.Mg; inchi=InChI=1S/2ClH.Mg/h2*1H;/q;;+2/p-2; smiles=[Cl-].[Cl-].[Mg+2] | |
| 2026-05-02T03:12:16.439447+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-06-02T07:05:13.391289+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: MINERAL (confidence: 0.80) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): MINERAL -> nutritional_roles.MINERAL_SOURCE | |
| 2026-08-10T00:00:00+00:00 | regrade_synonym_matches | REGRADED_EXACT_TO_SYNONYM | mapping_quality EXACT_MATCH -> SYNONYM_MATCH (#317). The record's label does not equal the term's primary label 'magnesium dichloride'; it matches the ChEBI synonym 'Magnesium chloride anhydrous' on CHEBI:6636. The schema defines EXACT_MATCH as a direct match to the term and SYNONYM_MATCH as a match to a known synonym, so the recorded grade overstated. ontology_id is unchanged — the term is correct. The SSSOM predicate is unaffected (both grades emit skos:exactMatch). | |
| 2026-08-13T00:00:00+00:00 | mint_hydrate_registry_terms | MINTED_REGISTRY_FOR_HYDRATE | identifier CHEBI:6636 -> kgmicrobe.compound:mgcl2_x_7_h2o; mapping_quality SYNONYM_MATCH -> NARROW_MATCH (#321/#334); §3 step 3. | |
| 2026-08-13T00:00:00+00:00 | add_water_of_hydration | ADDED_WATER_OF_HYDRATION | molecular_formula '2Cl.Mg' -> '2Cl.Mg.7H2O' (#321); the label states 7 water(s) of hydration, and the recorded formula was byte-identical to the anhydrous parent CHEBI:6636's ChEBI formula ('2Cl.Mg') — the mark of a value inherited from the parent rather than measured for this record. Water appended in ChEBI's own dot-separated notation. | |
| 2026-08-13T00:00:00+00:00 | regrade_hydrate_to_close_match | REGRADED_HYDRATE_TO_CLOSE_MATCH | mapping_quality NARROW_MATCH -> CLOSE_MATCH (#342); a hydrate is not subsumed by its anhydrous form, and ChEBI does not model it as such. | |
| 2026-08-27T03:16:39.519300+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 11/11 -> 19/19 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-12T00:00:00+00:00 | fix_malformed_hydrate_identities | LOCALIZED_MALFORMED_HYDRATE_IDENTITY | MAPPED | identifier kgmicrobe.compound:mgcl2_x_7_h2o -> kgmicrobe.compound:mgcl2_x_7_h2o; mapping_quality CLOSE_MATCH -> CLOSE_MATCH. Cleared unverified chemical_properties {'cas_rn': '12285-34-6', 'data_source': 'NCI CACTUS Chemical Identifier Resolver', 'retrieval_date': '2026-04-05T21:54:34.984632+00:00', 'molecular_formula': '2Cl.Mg.7H2O', 'inchi': 'InChI=1S/2ClH.Mg/h2*1H;/q;;+2/p-2', 'smiles': '[Cl-].[Cl-].[Mg+2]'} and marked 5 anhydrous or wrong-hydrate synonym(s) as REJECTED_LABEL for mediadive.compound:632 (#344). |