Na-formate

Ontology mapping

Primary identifier: CHEBI:62965
Ontology label: sodium formate
kg-microbe node: CHEBI:62965

Nutritional roles

Role
CARBON_SOURCE
Confidence
0.8
Evidence
- Reference type
  COMPUTATIONAL_PREDICTION
  Reference text
  Inferred from curated media-role name pattern
  Curator note
  Provisional role from a curated name-pattern rule; review recommended.
Role
ENERGY_SOURCE
Confidence
0.7
Evidence
- Reference type
  COMPUTATIONAL_PREDICTION
  Reference text
  Canonical energy substrate (catabolised for energy)
  Curator note
  Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.

Synonyms (13)

Synonym	Type	Source
Properties: Defined component, Inorganic compound, Simple component	RAW_TEXT	CultureMech
Properties: Simple component, Defined component, Inorganic compound	RAW_TEXT	CultureMech
FORMIC ACID, NA SALT	EXACT_SYNONYM	kg_microbe
Formic acid, sodium salt (1:1)	EXACT_SYNONYM	kg_microbe
Na-formiate	EXACT_SYNONYM	kg_microbe
Sodium Formate	EXACT_SYNONYM	kg_microbe
Sodium methanoate	EXACT_SYNONYM	kg_microbe
formic acid, sodium salt	EXACT_SYNONYM	kg_microbe
sodium formiate	EXACT_SYNONYM	kg_microbe
Properties: Defined component, Simple component, Inorganic compound	RAW_TEXT	CultureMech
Properties: Inorganic compound, Simple component, Defined component	RAW_TEXT	CultureMech
Properties: Defined component, Organic compound, Solution	RAW_TEXT	CultureMech
Sodium formate (Wako)	CATALOG_VARIANT	culturemech:output/ingredient_occurrences.tsv

Chemical properties

Cas rn: 141-53-7
Data source: PubChem API (preprocessed)
Retrieval date: 2026-04-05T23:45:36.513603+00:00
Molecular formula: CHO2.Na
Inchi: InChI=1S/CH2O2.Na/c2-1-3;/h1H,(H,2,3);/q;+1/p-1
Smiles: [H]C(=O)[O-].[Na+]

Evidence (1)

DATABASE_MATCH via CultureMech

Imported from CultureMech pipeline, quality=DIRECT_MATCH

Occurrence statistics

Total occurrences: 222
Distinct media: 222

Curation history

Timestamp	Curator	Action	New status	Changes
2026-03-09T06:54:18.022301+00:00	import_from_culturemech	IMPORTED	MAPPED	Initial import from CultureMech pipeline
2026-04-05T21:48:45.763358+00:00	fetch_cas_rn_from_culturebot_csv	ADDED_CAS_RN	MAPPED	Added CAS-RN:141-53-7 from CultureBotHT compounds_to_cas.csv (matched: Sodium formate)
2026-04-05T21:48:45.765330+00:00	fetch_cas_rn_from_culturebot_csv	ADDED_CAS_RN	MAPPED	Added CAS-RN:141-53-7 from CultureBotHT compounds_to_cas.csv (matched: sodium formate)
2026-04-05T21:48:45.767067+00:00	fetch_cas_rn_from_culturebot_csv	ADDED_CAS_RN	MAPPED	Added CAS-RN:141-53-7 from CultureBotHT compounds_to_cas.csv (matched: Sodium Formate)
2026-04-05T23:45:36.513614+00:00	fetch_cas_rn_with_preprocessing	ADDED_CAS_RN	MAPPED	Added CAS-RN:141-53-7 from PubChem API (preprocessed) via name preprocessing (Na-formate)
2026-04-05T23:45:36.860258+00:00	fetch_cas_rn_with_preprocessing	ADDED_CAS_RN	MAPPED	Added CAS-RN:141-53-7 from PubChem API (preprocessed) via name preprocessing (Na-formiate)
2026-04-18T00:00:00+00:00	cbclaw_kg_microbe_sweep LLM	ADDED_SYNONYMS	MAPPED	Added 7 synonyms from kg-microbe P4.4 enrichment: FORMIC ACID, NA SALT, Formic acid, sodium salt (1:1), Na-formiate, Sodium Formate, Sodium methanoate, ... (2 more)
2026-04-18T00:00:00+00:00	cbclaw_kg_microbe_sweep LLM	ADDED_SYNONYMS	MAPPED	Added 7 synonyms from kg-microbe P4.4 enrichment: FORMIC ACID, NA SALT, Formic acid, sodium salt (1:1), Na-formate, Na-formiate, Sodium methanoate, ... (2 more)
2026-04-18T00:00:00+00:00	cbclaw_kg_microbe_sweep LLM	ADDED_SYNONYMS	MAPPED	Added 7 synonyms from kg-microbe P4.4 enrichment: FORMIC ACID, NA SALT, Formic acid, sodium salt (1:1), Na-formate, Sodium Formate, Sodium methanoate, ... (2 more)
2026-04-19T07:39:23.955331+00:00	audit_mim_merge	MERGED_FROM_DUPLICATES	MAPPED	Absorbed 4 duplicate MIM record(s) into this one: Sodium_Formate.yaml, Na-formiate.yaml, Sodium_Formate_2.yaml, Sodium_Formate_3.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break.
2026-05-01T07:35:35.018554+00:00	auto_classify_ingredient_type	AUTO_CLASSIFY_INGREDIENT_TYPE		set ingredient_type=SINGLE_INGREDIENT (CHEBI primary)
2026-05-01T08:08:31.078441+00:00	auto_classify_ingredient_type	AUTO_BACKFILL_CHEBI_CHEMISTRY		molecular_formula=CHO2.Na; inchi=InChI=1S/CH2O2.Na/c2-1-3;/h1H,(H,2,3);/q;+1/p-1; smiles=[H]C(=O)[O-].[Na+]
2026-05-02T03:12:16.801487+00:00	auto_classify_ingredient_type	AUTO_CLASSIFY_INGREDIENT_TYPE		set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula))
2026-06-03T03:22:14.591888+00:00	infer_roles_from_name_lists	ANNOTATED		Added media role: CARBON_SOURCE (confidence: 0.80)
2026-06-04T05:38:59.201079+00:00	infer_energy_source	ANNOTATED		Added media role: ENERGY_SOURCE (confidence: 0.70)
2026-06-09T05:23:46.803963+00:00	correct_stale_ontology_labels.py	CORRECTED		ontology_label 'Na-formate' -> 'sodium formate': synced to canonical CHEBI label (preferred_term 'Na-formate' unchanged).
2026-07-20T00:00:00+00:00	migrate_media_roles_to_facets	ANNOTATED		Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE
2026-08-27T03:16:39.519406+00:00	refresh_occurrence_statistics	CORRECTED		occurrence_statistics 110/143 -> 222/222 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257]
2026-08-30T04:48:06.233536+00:00	claude_culturemech_alias_backfill	ADDED_SYNONYMS		Added 1 CultureMech recipe surface form(s) that folded onto this record's published label but were absent from MIM's label index, so CultureMech could not resolve them: 'Sodium formate (Wako)' (x1 CultureMech mentions). Source: culturemech:output/ingredient_occurrences.tsv.