Ontology mapping
- Primary identifier
-
CHEBI:63017 - Ontology label
- sodium L-tartrate
- kg-microbe node
CHEBI:63017
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Mineral
Synonyms (8)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Mineral source; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| (+)-tartrate | EXACT_SYNONYM | kg_microbe | |
| (2R,3R)-2,3-dihydroxybutanedioate | EXACT_SYNONYM | kg_microbe | |
| (2R,3R)-2,3-dihydroxysuccinate | EXACT_SYNONYM | kg_microbe | |
| (2R,3R)-tartrate | EXACT_SYNONYM | kg_microbe | |
| (R,R)-Tartrate | EXACT_SYNONYM | kg_microbe | |
| L-tartrate | EXACT_SYNONYM | kg_microbe | |
| L-threarate | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 868-18-8
- Data source
- PubChem API (preprocessed)
- Retrieval date
- 2026-04-05T23:45:44.065102+00:00
- Molecular formula
- C4H4O6
- Inchi
- InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-2/t1-,2-/m1/s1
- Smiles
- O=C([O-])[C@H](O)[C@@H](O)C(=O)[O-]
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T23:45:44.065112+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:868-18-8 from PubChem API (preprocessed) via name preprocessing (Na-tartrate) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 7 synonyms from kg-microbe P4.4 enrichment: (+)-tartrate, (2R,3R)-2,3-dihydroxybutanedioate, (2R,3R)-2,3-dihydroxysuccinate, (2R,3R)-tartrate, (R,R)-Tartrate, ... (2 more) |
| 2026-05-01T07:35:35.072707+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:31.136798+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C4H4O6; inchi=InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H; smiles=O=C([O-])[C@H](O)[C@@H](O)C(=O)[O-] | |
| 2026-05-02T03:12:16.865201+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.112088+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: MINERAL (confidence: 1.00) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): MINERAL -> nutritional_roles.CARBON_SOURCE | |
| 2026-08-10T00:00:00+00:00 | regrade_synonym_matches | REGRADED_EXACT_TO_SYNONYM | mapping_quality EXACT_MATCH -> SYNONYM_MATCH (#317). The record's label does not equal the term's primary label 'L-tartrate(2-)'; it matches the ChEBI synonym '(2R,3R)-2,3-dihydroxybutanedioate' on CHEBI:30924. The schema defines EXACT_MATCH as a direct match to the term and SYNONYM_MATCH as a match to a known synonym, so the recorded grade overstated. ontology_id is unchanged — the term is correct. The SSSOM predicate is unaffected (both grades emit skos:exactMatch). | |
| 2026-08-10T00:00:00+00:00 | merge_salt_label_duplicates | MERGED_INTO | Merged into CHEBI:63017 'Sodium tartrate'; occurrences transferred. Tombstoned REJECTED, SSSOM rows dropped. Same substance under two names — the abbreviated `Na-` prefix is why the earlier merge pass missed it (#315). | |
| 2026-08-15T00:00:00+00:00 | fix_tombstone_pointers | REFRESHED_TOMBSTONE_ONTOLOGY_ID | ontology_id CHEBI:30924 -> CHEBI:63017 (#360). The merge set identifier and status but left ontology_mapping untouched, so this tombstone kept advertising a term it no longer asserts — anything indexing by ontology_id routed through it. Now agrees with the merge target 'Sodium tartrate'. Provenance is unaffected: what the record used to assert is in this history. | |
| 2026-09-09T00:00:00+00:00 | fix_kg_microbe_node_id_drift | CORRECTED | kg_microbe_node_id CHEBI:30924 -> CHEBI:63017 (#554). The compatibility node id lagged a same-prefix identifier correction; the downstream node id must match the curated identifier unless a record intentionally crosses CURIE prefixes. |