Ontology mapping
- Primary identifier
-
CHEBI:91251 - Ontology label
- sodium glyoxylate
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Carbon Source
Synonyms (5)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Carbon source; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Glyoxylic acid, sodium salt | EXACT_SYNONYM | kg_microbe | |
| sodium glyoxalate | EXACT_SYNONYM | kg_microbe | |
| sodium glyoxylate | EXACT_SYNONYM | kg_microbe | |
| sodium oxoacetate | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 2706-75-4
- Data source
- PubChem (via CHEBI:91251)
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- C2HO3.Na
- Inchi
- InChI=1S/C2H2O3.Na/c3-1-2(4)5;/h1H,(H,4,5);/q;+1/p-1
- Smiles
- [H]C(=O)C(=O)[O-].[Na+]
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 3
- Distinct media
- 3
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 2706-75-4 from PubChem (via CHEBI:91251) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 4 synonyms from kg-microbe P4.4 enrichment: Glyoxylic acid, sodium salt, sodium glyoxalate, sodium glyoxylate, sodium oxoacetate |
| 2026-05-01T07:35:35.112935+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:31.178237+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C2HO3.Na; inchi=InChI=1S/C2H2O3.Na/c3-1-2(4)5;/h1H,(H,4,5);/q;+1/p; smiles=[H]C(=O)C(=O)[O-].[Na+] | |
| 2026-05-02T03:12:16.910330+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.112104+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.805491+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Na2-glyoxalate' -> 'sodium glyoxylate': synced to canonical CHEBI label (preferred_term 'Na2-glyoxalate' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE | |
| 2026-08-27T03:16:39.519439+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 2/2 -> 3/3 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |