Ontology mapping
- Primary identifier
-
CHEBI:29377 - Ontology label
- sodium carbonate
- kg-microbe node
CHEBI:29377
Physicochemical roles
- Role
- BUFFER
- Confidence
- 1.0
- Evidence
- Reference text
- CultureMech database (1251 occurrences as 'Buffer')
- Reference type
- DATABASE_ENTRY
- Url
- https://github.com/CultureBotAI/CultureMech
- Excerpt
- Role: Buffer; Properties: Defined component, Inorganic compound, Simple component
- Curator note
- Widespread use in media formulations (1251 occurrences). High confidence based on 'Defined component' property.
Synonyms (16)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| (adjust if required) | RAW_TEXT | CultureMech | |
| Role: Buffer; Properties: Defined component, Inorganic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Buffer; Properties: Defined component, Inorganic compound, Solution | RAW_TEXT | CultureMech | |
| Role: Buffer; Properties: Defined component, Simple component, Inorganic compound | RAW_TEXT | CultureMech | |
| Role: Buffer; Properties: Inorganic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Na CO | EXACT_SYNONYM | kg_microbe | |
| Na2CO3-CO2 buffer | EXACT_SYNONYM | kg_microbe | |
| NaCO3 | EXACT_SYNONYM | kg_microbe | |
| Natriumkarbonat | EXACT_SYNONYM | kg_microbe | |
| disodium carbonate | EXACT_SYNONYM | kg_microbe | |
| disodium trioxidocarbonate | EXACT_SYNONYM | kg_microbe | |
| Na2CO3 anhydrous | EXACT_SYNONYM | merged_from_duplicate_mim_record | |
| Sodium carbonate | EXACT_SYNONYM | merged_from_duplicate_mim_record | |
| Na2CO | RAW_TEXT | merged_from_unmapped_duplicate_review_2026_05_11 | |
| Na2CO3(Baker 3604) | RAW_TEXT | merged_from_unmapped_duplicate_review_2026_05_11 | |
| Role: Buffer; Properties: Inorganic compound, Simple component, Defined component | RAW_TEXT | CultureMech |
Chemical properties
- Cas rn
- 497-19-8
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-05T21:48:45.457660+00:00
- Molecular formula
- CO3.2Na
- Inchi
- InChI=1S/CH2O3.2Na/c2-1(3)4;;/h(H2,2,3,4);;/q;2*+1/p-2
- Smiles
- O=C([O-])[O-].[Na+].[Na+]
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 1,751
- Distinct media
- 1,751
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T21:48:45.457667+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:497-19-8 from CultureBotHT compounds_to_cas.csv (matched: Na2CO3) |
| 2026-04-05T21:48:45.459664+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:497-19-8 from CultureBotHT compounds_to_cas.csv (matched: Na2CO3) |
| 2026-04-05T21:48:45.741422+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:497-19-8 from CultureBotHT compounds_to_cas.csv (matched: Sodium carbonate) |
| 2026-04-05T21:48:45.743122+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:497-19-8 from CultureBotHT compounds_to_cas.csv (matched: Sodium Carbonate) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 497-19-8 from PubChem (via CHEBI:29377) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: Na CO, Na2CO3-CO2 buffer, NaCO3, Natriumkarbonat, disodium carbonate, ... (1 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 7 synonyms from kg-microbe P4.4 enrichment: Na CO, Na2CO3, Na2CO3-CO2 buffer, NaCO3, Natriumkarbonat, ... (2 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: Na CO, Na2CO3, Na2CO3-CO2 buffer, Natriumkarbonat, disodium carbonate, ... (1 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: Na CO, Na2CO3, NaCO3, Natriumkarbonat, disodium carbonate, ... (1 more) |
| 2026-04-19T07:39:23.955331+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 6 duplicate MIM record(s) into this one: Na2co3_Anhydrous.yaml, Sodium_Carbonate.yaml, Naco3.yaml, Sodium_Carbonate_2.yaml, Na2co3-co2_Buffer.yaml, Na2co3_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:35.134178+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:31.199280+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=CO3.2Na; inchi=InChI=1S/CH2O3.2Na/c2-1(3)4;;/h(H2,2,3,4);;/q;2*+1; smiles=O=C([O-])[O-].[Na+].[Na+] | |
| 2026-05-02T03:12:16.933667+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-11T06:02:00Z | mediaingredientmech-agentic-curation LLM | ABSORBED_UNMAPPED_DUPLICATE | MAPPED | Absorbed duplicate unmapped record Na2co.yaml (UNMAPPED_0041); raw source synonym Na2CO3(Baker 3604) resolves the truncated preferred term to sodium carbonate CHEBI:29377. |
| 2026-05-29T23:35:36.112120+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: BUFFER (confidence: 1.00) | |
| 2026-06-09T05:23:46.805862+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Na2CO3' -> 'sodium carbonate': synced to canonical CHEBI label (preferred_term 'Na2CO3' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): BUFFER -> physicochemical_roles.BUFFER | |
| 2026-08-27T03:16:39.519452+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 126/1251 -> 1751/1751 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |