Ontology mapping
- Primary identifier
-
CHEBI:75213 - Ontology label
- sodium molybdate dihydrate
- kg-microbe node
CHEBI:75213
Nutritional roles
- Role
- TRACE_ELEMENT
- Confidence
- 1.0
- Evidence
- Reference text
- CultureMech database (255 occurrences as 'Mineral source')
- Reference type
- DATABASE_ENTRY
- Url
- https://github.com/CultureBotAI/CultureMech
- Excerpt
- Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
- Curator note
- Widespread use in media formulations (255 occurrences). High confidence based on 'Defined component' property.
Synonyms (17)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| Role: Mineral source; Properties: Simple component, Inorganic compound, Defined component | RAW_TEXT | CultureMech | |
| Na2MoO4 . 2H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4 . H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4 x 2 H2O (0.1% w/v) | HYDRATE_FORM | kg_microbe | |
| Na2MoO4 x 2H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4 · 2H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4 · H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4 ⋅ 2H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4. 2H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4.H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4xH2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4⋅2H2O | HYDRATE_FORM | kg_microbe | |
| Na2MoO4・2H2O | HYDRATE_FORM | kg_microbe |
Rejected enrichment labels (1)
Provenance-only candidates: these are not synonyms and do not resolve to this record.
| Rejected label | Disposition | Source | Occurrences |
|---|---|---|---|
| sodium dioxido(dioxo)molybdenum | REJECTED_LABEL | chebi_synonym_review |
Chemical properties
- Cas rn
- 10102-40-6
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-05T21:48:45.478291+00:00
- Molecular formula
- MoO4.2Na.2H2O
- Inchi
- InChI=1S/Mo.2Na.4O/q;2*+1;;;2*-1
- Smiles
- [Na+].[Na+].[O]=[Mo](=[O])([O-])[O-]
Evidence (3)
[HISTORICAL — superseded by the #321 re-grade below: this record is a hydrate of CHEBI:75215, not an exact match to it] Imported from CultureMech pipeline, quality=DIRECT_MATCH
identifier CHEBI:75215 -> kgmicrobe.compound:na2moo42h2o; mapping_quality EXACT_MATCH -> NARROW_MATCH. The record is a hydrate of CHEBI:75215 ('sodium molybdate (anhydrous)') and was sharing that term's identifier — the identity collapse MAPPING_SEMANTICS §3 forbids, which made a distinct substance indistinguishable from its anhydrous parent downstream. ChEBI has no term for this hydrate and the record carries no verified CAS, so steps 1 and 2 are unavailable and step 3 applies.
molecular_formula 'MoO4.2Na' -> 'MoO4.2Na.2H2O'. The recorded value described the anhydrous salt while the label names a hydrate, understating the mass by 18 g/mol per water. Corrected because the label states 2 water(s) of hydration, and the recorded formula was byte-identical to the anhydrous parent CHEBI:75215's ChEBI formula ('MoO4.2Na') — the mark of a value inherited from the parent rather than measured for this record. Water appended in ChEBI's own dot-separated notation.
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T21:48:45.478294+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:10102-40-6 from CultureBotHT compounds_to_cas.csv (matched: Na2MoO4·2H2O) |
| 2026-04-05T23:46:02.458477+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:231-551-7 from PubChem API (ontology label) via name preprocessing (Na2MoO4 x 2H2O) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 10102-40-6 from CultureBotHT/compounds_to_cas.csv |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 12 synonyms from kg-microbe P4.4 enrichment: Na2MoO4 . 2H2O, Na2MoO4 . H2O, Na2MoO4 x 2 H2O (0.1% w/v), Na2MoO4 x 2H2O, Na2MoO4 · 2H2O, ... (7 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 12 synonyms from kg-microbe P4.4 enrichment: Na2MoO4 . 2H2O, Na2MoO4 . H2O, Na2MoO4 x 2 H2O (0.1% w/v), Na2MoO4 · 2H2O, Na2MoO4 · H2O, ... (7 more) |
| 2026-04-19T07:23:20.785693+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 1 duplicate MIM record(s) into this one: Na2moo4_X_2h2o.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:35.201214+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:31.267106+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=MoO4.2Na; inchi=InChI=1S/Mo.2Na.4O/q;2*+1;;;2*-1; smiles=[Na+].[Na+].[O]=[Mo](=[O])([O-])[O-] | |
| 2026-05-02T03:12:17.009252+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.112178+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: MINERAL (confidence: 1.00) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): MINERAL -> nutritional_roles.TRACE_ELEMENT | |
| 2026-08-13T00:00:00+00:00 | mint_hydrate_registry_terms | MINTED_REGISTRY_FOR_HYDRATE | identifier CHEBI:75215 -> kgmicrobe.compound:na2moo42h2o; mapping_quality EXACT_MATCH -> NARROW_MATCH (#321/#334); §3 step 3. | |
| 2026-08-13T00:00:00+00:00 | add_water_of_hydration | ADDED_WATER_OF_HYDRATION | molecular_formula 'MoO4.2Na' -> 'MoO4.2Na.2H2O' (#321); the label states 2 water(s) of hydration, and the recorded formula was byte-identical to the anhydrous parent CHEBI:75215's ChEBI formula ('MoO4.2Na') — the mark of a value inherited from the parent rather than measured for this record. Water appended in ChEBI's own dot-separated notation. | |
| 2026-08-13T00:00:00+00:00 | merge_minted_hydrate_duplicates | MERGED_INTO | Merged into CHEBI:75213 'Na2MoO4 x 2 H2O'; occurrences transferred. The 'kgmicrobe.compound:na2moo42h2o' minted for this record is withdrawn: §3 step 3 requires that no specific term exists, and one does (the record's own CAS 10102-40-6 is registered by ChEBI against CHEBI:75213 'sodium molybdate dihydrate'), so step 1 applied and the target identifier was already held. Tombstoned REJECTED, SSSOM rows dropped (#321). | |
| 2026-08-15T00:00:00+00:00 | fix_tombstone_pointers | REFRESHED_TOMBSTONE_ONTOLOGY_ID | ontology_id CHEBI:75215 -> CHEBI:75213 (#360). The merge set identifier and status but left ontology_mapping untouched, so this tombstone kept advertising a term it no longer asserts — anything indexing by ontology_id routed through it. Now agrees with the merge target 'Na2MoO4 x 2 H2O'. Provenance is unaffected: what the record used to assert is in this history. | |
| 2026-09-09T00:00:00+00:00 | fix_kg_microbe_node_id_drift | CORRECTED | kg_microbe_node_id CHEBI:75215 -> CHEBI:75213 (#554). The compatibility node id lagged a same-prefix identifier correction; the downstream node id must match the curated identifier unless a record intentionally crosses CURIE prefixes. | |
| 2026-09-23T06:21:57.638351+00:00 | claude LLM | REJECTED_WRONG_FORM_SYNONYMS | REJECTED | Retyped REJECTED_LABEL: 'sodium dioxido(dioxo)molybdenum' (EXACT_SYNONYM): the anhydrous CHEBI:75215 name on the dihydrate CHEBI:75213 tombstone (#232). The token is kept as provenance only; it must not resolve, be exported, or enter the SSSOM other column. |