Ontology mapping
- Primary identifier
-
CHEBI:132108 - Ontology label
- sodium silicate nonahydrate
- kg-microbe node
CHEBI:132108
Nutritional roles
- Role
- MINERAL_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Mineral
Synonyms (11)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Na2SiO3.9H2O | HYDRATE_FORM | kg_microbe | |
| Na2SiO3·9H2O | HYDRATE_FORM | kg_microbe | |
| Na2SiO3・9H2O | HYDRATE_FORM | kg_microbe | |
| Na2SiO3∙9H2O | HYDRATE_FORM | kg_microbe_via_hydration_routing | |
| Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Na2SiO3•9H2O | RAW_TEXT | CultureMech | |
| Na2SiO3•9H2O(CAS: 13517-24-3) | RAW_TEXT | CultureMech | |
| Na2SiO3•9H2O(Sigma 307815) | RAW_TEXT | CultureMech | |
| sodium oxosilanebis(olate)--water (1/9) | EXACT_SYNONYM | chebi_synonym_review | |
| Na2SiO3 | RAW_TEXT | sssom_other_backfill | |
| Na2SiO3 x 9 H20 | RAW_TEXT | sssom_other_backfill |
Chemical properties
- Cas rn
- 13517-24-3
- Data source
- PubChem (via CHEBI:132108)
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- 9H2O.2Na.O3Si
- Inchi
- InChI=1S/2Na.O3Si.9H2O/c;;1-4(2)3;;;;;;;;;/h;;;9*1H2/q2*+1;-2;;;;;;;;;
- Smiles
- O.O.O.O.O.O.O.O.O.O=[Si]([O-])[O-].[Na+].[Na+]
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 36
- Distinct media
- 36
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 13517-24-3 from PubChem (via CHEBI:132108) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 3 synonyms from kg-microbe P4.4 enrichment: Na2SiO3.9H2O, Na2SiO3·9H2O, Na2SiO3・9H2O |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 3 synonyms from kg-microbe P4.4 enrichment: Na2SiO3 x 9 H2O, Na2SiO3.9H2O, Na2SiO3・9H2O |
| 2026-04-19T06:30:07.230267+00:00 | audit_p44_hydration_routing | ADDED_SYNONYMS_VIA_HYDRATION_ROUTING | MAPPED | Added 1 synonyms re-routed from anhydrous/hydrate sibling records (Na2sio39h2o.yaml): Na2SiO3∙9H2O |
| 2026-04-19T06:30:07.230267+00:00 | audit_p44_hydration_routing | ADDED_SYNONYMS_VIA_HYDRATION_ROUTING | MAPPED | Added 1 synonyms re-routed from anhydrous/hydrate sibling records (Na2sio3_X_9_H2o.yaml): Na2SiO3∙9H2O |
| 2026-04-19T07:23:20.785693+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 1 duplicate MIM record(s) into this one: Na2sio39h2o.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:35.282472+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:31.355819+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=9H2O.2Na.O3Si; inchi=InChI=1S/2Na.O3Si.9H2O/c;;1-4(2)3;;;;;;;;;/h;;;9*1; smiles=O.O.O.O.O.O.O.O.O.O=[Si]([O-])[O-].[Na+].[Na+] | |
| 2026-05-02T03:12:17.103968+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-05T00:00:00+00:00 | ingredient_mapping_review_2026_05_05 | MERGED | MAPPED | Absorbed duplicate record Na2sio39h2o.yaml (UNMAPPED_0016) into Na2sio3_X_9_H2o.yaml; source occurrence counts and synonyms were merged. Exact local sodium metasilicate nonahydrate mapping CHEBI:132108; source CAS synonym matches local record. |
| 2026-05-29T23:35:36.112239+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: MINERAL (confidence: 1.00) | |
| 2026-06-09T05:23:46.808025+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Na2SiO3 x 9 H2O' -> 'sodium silicate nonahydrate': synced to canonical CHEBI label (preferred_term 'Na2SiO3 x 9 H2O' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): MINERAL -> nutritional_roles.MINERAL_SOURCE | |
| 2026-08-27T03:16:39.519502+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 28/28 -> 36/36 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-02T17:40:44.716277+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 1 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: 'Na2SiO3'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). | |
| 2026-09-02T22:41:49.137449+00:00 | claude_sssom_surface_form_backfill | ADDED_SYNONYMS | Recovered 1 surface form(s) that the published SSSOM `other` carried but no curated record did, so a rebuild would have dropped them from KGX: 'Na2SiO3 x 9 H20'. Tokens already present on the kg-microbe ontology node were left out as redundant (#520). |