Ontology mapping
- Primary identifier
-
kgmicrobe.compound:neomycin_trisulfate_salt_hydrate - Ontology term
-
CHEBI:31635— neomycin sulfate - Ontology label
- neomycin sulfate
Physicochemical roles
- Role
- SELECTIVE_AGENT
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
Chemical properties
- Cas rn
- 1405-10-3
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-29T06:34:31.158938+00:00
Evidence (3)
Imported from CultureBotHT. CAS-RN→CHEBI mapping resolved via OAK CHEBI sqlite (cas xref). FEBA/Hans80 panels: FEBA_stress.
mapping_quality EXACT_MATCH -> NARROW_MATCH. CHEBI:31635 carries no structural definition, so it is a class rather than an individual, and the record's label 'Neomycin trisulfate salt hydrate' does not equal the term label 'neomycin sulfate'. EXACT_MATCH therefore asserted an identity the pair does not have. Re-graded because a specific salt/hydrate form of the term.
mapping_quality NARROW_MATCH -> CLOSE_MATCH, predicate skos:narrowMatch -> skos:closeMatch. narrowMatch asserts this record is *narrower in meaning* than CHEBI:31635 ('neomycin sulfate') — a subsumption ChEBI itself denies: it files hydrates under CHEBI:35505 'hydrate', never under the anhydrous compound, which is not an ancestor even transitively. A hydrate is a distinct substance containing the anhydrous form, not a specialization of it. closeMatch claims similarity without subsumption. The ontology_id and the record's own identifier are unchanged.
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-29T06:34:31.158938+00:00 | audit_cas_chebi_followup | CREATED_FROM_CAS_LOOKUP | MAPPED | Created from CultureBotHT CAS-RN=1405-10-3; CHEBI resolved via OAK CHEBI sqlite (cas xref); Imported from CultureBotHT. CAS-RN→CHEBI mapping resolved via OAK CHEBI sqlite (cas xref). FEBA/Hans80 panels: FEBA_stress. |
| 2026-05-01T07:35:35.430895+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-02T03:12:17.289781+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-06-02T07:05:13.391977+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: SELECTIVE_AGENT (confidence: 0.80) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): SELECTIVE_AGENT -> physicochemical_roles.SELECTIVE_AGENT | |
| 2026-08-13T00:00:00+00:00 | regrade_class_overstatements | REGRADED_CLASS_OVERSTATEMENT | mapping_quality EXACT_MATCH -> NARROW_MATCH (#322); a specific salt/hydrate form of the term. | |
| 2026-08-13T00:00:00+00:00 | mint_registry_for_narrow_records | MINTED_REGISTRY_IDENTIFIER | identifier CHEBI:31635 -> kgmicrobe.compound:neomycin_trisulfate_salt_hydrate. The record is narrower than CHEBI:31635 (source-, form- or scope-qualified), and §3 forbids expressing a more specific thing by sharing a broader term's identifier. Minted per step 3. (#322) Required by SSSOM Rule B1 once the mapping was re-graded to narrow/broad. | |
| 2026-08-13T00:00:00+00:00 | regrade_hydrate_to_close_match | REGRADED_HYDRATE_TO_CLOSE_MATCH | mapping_quality NARROW_MATCH -> CLOSE_MATCH (#342); a hydrate is not subsumed by its anhydrous form, and ChEBI does not model it as such. |