Ontology mapping
- Primary identifier
-
CHEBI:7916 - Ontology label
- pantothenic acid
- kg-microbe node
CHEBI:7916
Nutritional roles
- Role
- VITAMIN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Vitamin Source
Synonyms (5)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Vitamin; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Vitamin; Properties: Simple component, Organic compound, Defined component | RAW_TEXT | CultureMech | |
| 3-(2,4-dihydroxy-3,3-dimethylbutanamido)propanoic acid | EXACT_SYNONYM | kg_microbe | |
| DL-Pantothenic acid | EXACT_SYNONYM | kg_microbe | |
| N-(2,4-dihydroxy-3,3-dimethylbutanoyl)-beta-alanine | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 599-54-2
- Data source
- OAK/CHEBI xref
- Retrieval date
- 2026-04-19T07:39:40.088267+00:00
- Molecular formula
- C9H17NO5
- Inchi
- InChI=1S/C9H17NO5/c1-9(2,5-11)7(14)8(15)10-4-3-6(12)13/h7,11,14H,3-5H2,1-2H3,(H,10,15)(H,12,13)
- Smiles
- CC(C)(CO)C(O)C(=O)NCCC(=O)O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 126
- Distinct media
- 126
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:58.011755+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:599-54-2 from PubChem API via name lookup (DL-Pantothenic acid) |
| 2026-04-05T21:48:45.632062+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:137-08-6 from CultureBotHT compounds_to_cas.csv (matched: Pantothenic acid) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 3 synonyms from kg-microbe P4.4 enrichment: 3-(2,4-dihydroxy-3,3-dimethylbutanamido)propanoic acid, DL-Pantothenic acid, N-(2,4-dihydroxy-3,3-dimethylbutanoyl)-beta-alanine |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 2 synonyms from kg-microbe P4.4 enrichment: 3-(2,4-dihydroxy-3,3-dimethylbutanamido)propanoic acid, N-(2,4-dihydroxy-3,3-dimethylbutanoyl)-beta-alanine |
| 2026-04-19T07:39:40.088622+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 1 duplicate MIM record(s) into this one: Dl-pantothenic_Acid.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-04-19T07:39:40.088267+00:00 | audit_resolve_risky_cas_rn | RESOLVED_CAS_RN_CONFLICT | MAPPED | CAS-RN conflict across merged group (137-08-6|599-54-2) resolved via OAK canonical xref: 599-54-2 (match) |
| 2026-05-01T07:35:35.700707+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:31.811321+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C9H17NO5; inchi=InChI=1S/C9H17NO5/c1-9(2,5-11)7(14)8(15)10-4-3-6(1; smiles=CC(C)(CO)C(O)C(=O)NCCC(=O)O | |
| 2026-05-02T03:12:17.634765+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.112552+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: VITAMIN_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.817180+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Pantothenic acid' -> 'pantothenic acid': synced to canonical CHEBI label (preferred_term 'Pantothenic acid' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): VITAMIN_SOURCE -> nutritional_roles.VITAMIN_SOURCE | |
| 2026-08-27T03:16:39.519665+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 53/109 -> 126/126 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |