Ontology mapping
- Primary identifier
-
MICRO:0002393 - Ontology label
- Proteose Peptone No. 2
Nutritional roles
- Role
- PROTEIN_SOURCE
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
Synonyms (1)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Proteose peptone No 2 (DIFCO 0121-01-3) | CATALOG_VARIANT | manual |
Evidence (2)
CURATOR_JUDGMENT
via fix_micro_malformed_iris
SUPERSEDED by source-backed review #759: MICRO:0002393 is an OLS4 non-defining MicrO.owl IRI; Proteose Peptone No. 2 is a distinct catalog-specific peptone, so this record keeps a local identity and anchors to the well-formed generic Proteose peptone parent.
CURATOR_JUDGMENT
via src/mediaingredientmech/ontology_sources/micro/manifest.json
Restore MICRO:0002393 'Proteose Peptone No. 2' from the pinned KG-Microbe MICRO KGX (#759). Both node snapshots contain this exact class label; current KGX parent(s): MICRO:0000180. Original IRI: http://purl.obolibrary.org/obo/MicrO.owl/MICRO_0002393. This supersedes #137's canonical-IRI-only rejection; it does not claim OLS defining-ontology status. No verified CAS RN is supplied for this material.
Occurrence statistics
- Total occurrences
- 7
- Distinct media
- 7
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-05-01T19:55:09.678923+00:00 | foodon_pass | AUTO_CREATE_FROM_MICRO | created with primary MICRO:0002393 | |
| 2026-05-02T03:12:17.926549+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=UNDEFINED_MIXTURE (name matches complex pattern 'peptone') | |
| 2026-06-03T02:06:01.748347+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: PROTEIN_SOURCE (confidence: 0.80) | |
| 2026-06-08T23:23:58.335582+00:00 | audit_occurrence_stats | CORRECTED | Backfilled missing occurrence_statistics (0/0): ontology-derived record with no tracked media occurrences. | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): PROTEIN_SOURCE -> nutritional_roles.PROTEIN_SOURCE | |
| 2026-08-27T03:16:39.519753+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 0/0 -> 7/7 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-10T11:28:59.951056+00:00 | fix_micro_malformed_iris LLM | CORRECTED | MAPPED | Re-grounded MICRO:0002393 'Proteose Peptone No. 2' -> kgmicrobe.ingredient:proteose_peptone_no_2 'proteose peptone' (NARROW_MATCH). MICRO:0002393 is an OLS4 non-defining MicrO.owl IRI; Proteose Peptone No. 2 is a distinct catalog-specific peptone, so this keeps a local identity and anchors it to the well-formed generic Proteose peptone parent. See #137. |
| 2026-09-23T17:09:55.758900+00:00 | restore_micro_source_identities LLM | CORRECTED | MAPPED | Restore MICRO:0002393 'Proteose Peptone No. 2' from the pinned KG-Microbe MICRO KGX (#759). Both node snapshots contain this exact class label; current KGX parent(s): MICRO:0000180. Original IRI: http://purl.obolibrary.org/obo/MicrO.owl/MICRO_0002393. This supersedes #137's canonical-IRI-only rejection; it does not claim OLS defining-ontology status. No verified CAS RN is supplied for this material. |